Scaffold Ga0214921_10007473

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10007473
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14563
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (77.78%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F005741	Metagenome / Metatranscriptome	391	Y
F008132	Metagenome / Metatranscriptome	338	Y
F011299	Metagenome / Metatranscriptome	292	Y
F019324	Metagenome / Metatranscriptome	230	Y
F023344	Metagenome / Metatranscriptome	210	Y
F036238	Metagenome	170	Y
F084246	Metagenome	112	Y
F085262	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000747311	F005741	AGG	MRNRFRIEIYDANKLNDLTIYSEQGVDKEYLTELVFSNLRRFNGKVNAYVVDTLKEKKTTAMFINEDIVNKVNSKTKVTTAKELHLA
Ga0214921_1000747313	F085262	AGGAGG	MMSNLYSILSEWYPDGNYSEAELWDAVAESEGVDVYSIMDGDLTEYL
Ga0214921_100074732	F019324	GAG	MLGYEMSDVDEMINAIQSIITTVNSDDDPWLYNNLWKAQEFLQGLWAEGYFD
Ga0214921_1000747320	F011299	N/A	MTRKDYVAVAEILKYASDKSHPALFSKIVNDFAVMFAQDNPRFDVNRFHEASGYNVPKFTTR
Ga0214921_1000747326	F008132	AGG	MTKWDTIQADVADQYAHLDEEEALMEWVGEEDDMFGFTKAIEIDHLTDEQLDEVFNMFGD
Ga0214921_1000747329	F084246	GGA	MTKKAGKEVENTTCYTYKVEMLIQVLAKDEPTALEQLEKSGGYVTDRQITLMDSVALYNGKKG
Ga0214921_100074733	F023344	AGGA	MEAFTDTVGEHILGAIQVDIEQALFEDWNNANLDEGTEFAEYKFMQFAPSNLKQSYNEYYGYTEKDEFYLC
Ga0214921_100074734	F036238	AGGCGG	MGDRANFAFKQSNGETIVLYGHWAGHNMLANLANAVDKARARWADESYATRICISQLIGDDWNSETGWGLQINSISDNEHKIPLIDWSTQTFSLHEEAPWSEESKVRGMLDTPIFNMSLDSFVKKYSPALV
Ga0214921_100074737	F000311	GAG	MYFELRAPDQLAMEMAYWDAQITGLDPEAMDSLTFNIGTGSIEKVTRIREKHNLELIHESDSEPTGYRRD