Scaffold Ga0214921_10007153

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10007153
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14984
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (71.88%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019450	Metagenome / Metatranscriptome	229	Y
F037622	Metagenome	167	N
F039994	Metagenome	162	N
F069832	Metagenome	123	Y
F102824	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_100071532	F039994	GGA	MENPPTIEEMGNAASEIVWRVMGNGSAKSAYGEWFWKDRPVFDYHITRCIKHAVTAQQQIHLNHPNPDESGENALDHLERAVVRGLFAWMQLKKGLPRL
Ga0214921_1000715324	F037622	AGGA	MTEDQIIKAYLSKLGKKGGSVTGPTKARKMGKEHYQMVAQRQRERWDRWRAENGRPAIKRER
Ga0214921_1000715327	F019450	GGAGG	MISWAVYNSQGQFFARFISYRRALAWAIRNGMEWTAEIRKEKENTI
Ga0214921_1000715331	F069832	N/A	MDDISGSPTAKKSKNGKFKFTSEIEAKILDACGSGFTIEKAGALVGVNPSTIRTWIQRMPKFGEKVETARKNHELSLLKSIEQAGEKSWQAKAWLAERIYHHAIPSSRLTVDTSVTHNAGAGFAQLLAGLASRRAEKKAQVIECQDVKALEQPKSKYNTYCATDDMQTIVTPTPSQNEKAVGKARHVRMKRRKPRGKAMDTTTPPATPPAPV
Ga0214921_100071535	F102824	AGG	MTSVRVQREDGKWRVTTMAGNPIGPRLWGAVPPNGLPSIEDLFEDKAKAQDAADLWNAYAMWCQERSGKRKRR