Scaffold Ga0214921_10007013

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10007013
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15164
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (62.86%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Associated Families: 13

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000808	Metagenome / Metatranscriptome	882	Y
F004132	Metagenome / Metatranscriptome	451	Y
F005348	Metagenome / Metatranscriptome	403	Y
F006844	Metagenome / Metatranscriptome	363	Y
F007112	Metagenome	357	Y
F014849	Metagenome / Metatranscriptome	259	Y
F019324	Metagenome / Metatranscriptome	230	Y
F034566	Metagenome	174	Y
F044490	Metagenome	154	N
F054581	Metagenome	139	Y
F084217	Metagenome / Metatranscriptome	112	N
F084233	Metagenome / Metatranscriptome	112	Y
F100416	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000701318	F004132	GAG	MTQEQLSVPYNPNLLVTYKAIPDTYAAPESPTFMTDKVTQIEWDLHNGRNTLKQLAERRLDISWLEEQIAEWYDPNYTKEEVLQAIIEHFGFNPTKEIEVQGTVSFSGTINIPLSEIEDFDLSNVTIDVDLNSYEYDADLTVDEVSLEDHY
Ga0214921_100070132	F084217	AGG	MSDYLNYLDEVYDDLVAEYGEGITLAYHEANIKEM
Ga0214921_1000701321	F084233	AGGA	MTLNVEIYEMDYSCSPGGINCWEVSINDWCVSDFKTAGDAIQYVLDKYPYDELNLNVKSLNWYFKEFADEYAV
Ga0214921_1000701323	F019324	GGA	MLGYERDDLDNMVIAVESALTTVNSDDDPWLHRNLTQASDFLQGLWAEGYFD
Ga0214921_1000701325	F007112	GGA	VHTLHYIAVEADSKQEAFDKVVVSLQSNEDGYRLADWSDWHVVGGGRWSTNANKKSENNLMGGYNDDPTDVLGYDKDKDKFQETLVCIGKWKSQVMNRAIKEFKPDKFISDMVDYASEGGRSEYNGDIMMSAYTMKETATMLMGGWTPDSGLYDLAENIAEATYLKERLDKPEQAVRQYLVPVDFHF
Ga0214921_1000701326	F006844	AGGAG	MAKWEIEVIFEPTGDYMNFVYETDTEDEDIIFNEVANQLSIVPNLVEKNEEE
Ga0214921_1000701328	F044490	N/A	MMRIRVLRASKEEKVAVAIGRLLSDFHLDLEKVGFYVAKSLPHTIYRRALEVLQSAEFQENEVEQNKLGYRNDRLY
Ga0214921_1000701332	F054581	AGGA	MCPHCNVKLIPILYGFVDPKYVDMHKEGLVFLVSTTYHTKNSPTSYCKKCEDSFDIKVSL
Ga0214921_1000701333	F034566	AGG	MRFKLKGIIWGQSALIVILLLSLLFVGGDLKQARKMTLDQSNYCIKYTSDIIASSRLDLIREQDAHSRTVDKANSVIDDIVNRYNSLVARYNKSTGGTNYDPLSIYSYRIRP
Ga0214921_100070134	F005348	N/A	MINTLMRFECDECNGVGLIFWGNDLDYDVEKCECENFALGTLFTTKEND
Ga0214921_100070136	F014849	N/A	MEGVKQMITNLDLIAIIIALSGSMLVMFLFYKQNVAQQKEIRRLRNELRKAFKV
Ga0214921_100070137	F100416	AGAAGG	MGKVKEALMDILEHEYCYGYGWIYQGNNVDFDSEPCECNPYAISADELMDWKLN
Ga0214921_100070139	F000808	AGGAG	MEYTYSLTTSYDGELIHTLRVSDMLEAIRAWDKCVDYGFAKEYATYNLSDPTGKMYTKTFYADGNVVIK