Scaffold Ga0214921_10006652

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10006652
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15701
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (58.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002935	Metagenome	519	Y
F030765	Metagenome	184	Y
F034573	Metagenome	174	Y
F045752	Metagenome / Metatranscriptome	152	Y
F093851	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000665218	F030765	AGGAG	MDTEQTFDQEFTVEEITKAIVNQAKSDIKAKYGNKKRHRQ
Ga0214921_1000665225	F034573	AGGAG	MYRISRAVEKSKEEKVAEKIGVLLSDFNLDLEKVGVYMSRSLPYLVFRRGLEVLESAQFQLDIVEQKRVEYNHDRLF
Ga0214921_1000665234	F093851	N/A	MPLVGYESVDADDMIIALDSVLTTINSDDDPWLYNNTWRAMDLLKGLQAEGYFD
Ga0214921_1000665236	F002935	N/A	TMRERSKGYLGQIVDGKKLAVIANGIYNLQYSSDFSECTVDNLLFITLEEKNVYGDNKYALVCTEGVGWEQDTYGCLEVPTNIGQMGLWNGRVFISVDTVKECLTDQTADIADYIRVFGDRLDNNCSLWQSKMSVAEDMIVV
Ga0214921_100066529	F045752	AGGA	MADPNQTPARGDWLCPCSGCTKSIAAERKQLIELFEKHKHDYLVYRGSSFHKDTGKLMWAKDDAMAYAEGIDEVIKLIKNRMPKLKSKPL