Scaffold Ga0214921_10005165

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10005165
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18608
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001629	Metagenome	660	Y
F019438	Metagenome	229	Y
F021243	Metagenome	219	Y
F059768	Metagenome / Metatranscriptome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000516511	F019438	GGAGG	METIVVTILLGFIGVSVAGVVLVALMNLWFWMDENERGDR
Ga0214921_1000516513	F059768	AGGAG	MTFQEQIKALPEAERLKFFRQIMEVVDAGRKAGVPPEQWAKEYADTYKNIEVKA
Ga0214921_1000516514	F021243	GAGG	MKDPEDEAFEQLALKQGQWEHTSGWRKRQIADAHKPSLEYVEMHYNDTLEQVAVELETKFTQPFGRDTVQSFAAFVRGMKR
Ga0214921_1000516515	F001629	AGGGGG	MILSQGKLADGLVDELLEAIHKYDETLYMATVIGVLELVKQQLITESLDRGDDDESY