Scaffold Ga0214921_10005138

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10005138
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18694
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (77.08%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000441	Metagenome / Metatranscriptome	1136	Y
F000473	Metagenome / Metatranscriptome	1097	Y
F000671	Metagenome / Metatranscriptome	945	Y
F000852	Metagenome / Metatranscriptome	860	Y
F001781	Metagenome / Metatranscriptome	635	Y
F026561	Metagenome / Metatranscriptome	197	Y
F037227	Metagenome / Metatranscriptome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000513819	F026561	GAGG	MSDINGTGMEAPPNPSPAGAVTSREATRKNPKQGLRPGIKVDTNKHGIRRETNLVPKPPKKFGRKKV
Ga0214921_100051382	F000263	AGG	MNNTIELPPHLQRMVNYDINGLDIMHGELKNLMLIWEKQLENAQEIEDESGDAMDSMERKYFEGFLDSLVALYNLTYQLSFAIGIRTENRKDGHL
Ga0214921_1000513827	F037227	N/A	MANMTVLEEIIEEVSQELYQKLWNAIPVEEQTEDSSKAIGLNSRETTLFVIQTFMNKFNAAAEELKDQEEVLTPKPHIVK
Ga0214921_1000513833	F000671	GAGG	MEKILCYSCSKTKNQLNAKRSSLLPINLLMCESCITSKFEPRWLIILAGRSNGPDYVRDYVLKKRYVGNEISASELLV
Ga0214921_1000513835	F000473	AGGAG	VFIDKNKDHFKHGINQWTGDPNKPVFYNNDMAQKIKQIKVPVMGLQMDIAKYPDFLAIKLYEDNFIFFEGIKKEMVIDYVDKVKKVIESYGVRCELIGVPSERVL
Ga0214921_100051384	F001781	AGGAG	MKPDDKDKLNECLKILDTTDLGLSLVWLWTWSTINNIFEDETYKQKCTIDEMWDHLCEAVEAGQGFSLEYGAEQHQDDVLEWMMNREYIVDTMFEEEEEENEDD
Ga0214921_100051385	F000441	AGGAGG	MKMTDTYLNDQLDKAQKLLWGGSETENIEAHNIIARLIKDREGLIKNS
Ga0214921_100051386	F000852	GGA	MTTKREYLKQQGITVGARGRFSGAAKVALQEAVAKGVTFTAEPKVSKAK