Scaffold Ga0214921_10005036

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10005036
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18945
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (39.66%)
• Novel Protein Genes: 19
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (52.63%)
• Associated Families: 19

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011914	Metagenome / Metatranscriptome	285	Y
F016774	Metagenome / Metatranscriptome	244	Y
F026210	Metagenome / Metatranscriptome	198	Y
F027756	Metagenome / Metatranscriptome	193	N
F030670	Metagenome / Metatranscriptome	184	Y
F032548	Metagenome / Metatranscriptome	179	Y
F034827	Metagenome / Metatranscriptome	173	Y
F036564	Metagenome / Metatranscriptome	169	N
F039497	Metagenome / Metatranscriptome	163	N
F048101	Metagenome / Metatranscriptome	148	N
F062446	Metagenome / Metatranscriptome	130	Y
F062447	Metagenome / Metatranscriptome	130	N
F064403	Metagenome / Metatranscriptome	128	N
F078229	Metagenome / Metatranscriptome	116	Y
F082109	Metagenome / Metatranscriptome	113	Y
F082149	Metagenome / Metatranscriptome	113	N
F096610	Metagenome / Metatranscriptome	104	N
F104482	Metagenome / Metatranscriptome	100	N
F104483	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000503610	F062447	AGAAGG	MKHKIFWEKNSRVKGVVPSAQIINKTSTDKFPCDAVTIRMYNINSKNPTATAYFYGKEAQGSSWNGSNYTYAETKLMVTFDKDKEGYSFNGGLKSYSLQDLKEVLDSVRETLNKL
Ga0214921_1000503613	F104482	N/A	MKKQKNKMTSEEFEKAMKAQGCFVSKVYYRITFKGMGLYILNSFQFKLLPKFFYMSGKYFTECGFHWLGWIFEFQWNR
Ga0214921_1000503615	F034827	N/A	MKYTITSRDQEAMVEFDSLKEGEVFSFFDPESVQRGNHSIYMKIKNGSNNIVNLEDGKVFGFTDKKRNTLNDPDEQQGNKVYKLNAKINVII
Ga0214921_1000503616	F078229	N/A	MSKIKYTYYVEQDKDKDGNYVQSFSIYKTPLVKTIKVKTFKNLKDSNDFLEKYESN
Ga0214921_1000503617	F030670	N/A	MKVIRYIKQLEDEFGNDLELWGAYEETRKDNYPNVDFIDAKLLKTFPSPYHARNWMENYG
Ga0214921_100050362	F082149	AGG	MKLGLHIDWCIGRWFGRNNNLEIRVTLPTISLGYKQEDDNKWFGFKFNLRTDISFESYEYGKIFSLIILGFGVKVSKFNL
Ga0214921_1000503624	F027756	GAG	MNLEDLIDRKILYLNYPINKYSIQEGKVTEISPAKKCIKINADWHLKENIRIIELFSEDERPKLGFGLTKNEKQAK
Ga0214921_1000503625	F032548	N/A	MKNKQNKEMEKAIKILEELVTQADEDCPQDCRTMHFVNALEEASEFIMEYKNAK
Ga0214921_1000503626	F036564	GGAG	MKLGRVCVDLNYIVDMDNQEMVERAIECLYEDLMQGVKYGNITDWIDVIEDKNAKQDMIPEFLLEKEND
Ga0214921_1000503627	F064403	AGAAGG	MINPRAKILSDLKRAYLKEHPVSLVDRILGYLNNLTDFQLCQLYSEKYETNTKYMAEQFEFKF
Ga0214921_100050363	F039497	N/A	MSEEDNFNSKAGNQLRDTLYKDILRYAQESDMTAYQVIGVLESLKFDLLNAMRNVDEGGDEDEI
Ga0214921_1000503635	F096610	N/A	MANRPKTYFVKMTDNVNGTFTISEAKVLDKVNQHTRHWRSFDKRKLTSKLRNANLVTR
Ga0214921_1000503638	F016774	AGAAG	MPSKKQKIEFLTEHLASLNHWRDQLLALEKSYHSKDPEKERTCRNMINKYLDDVLAYNKNIKEKPKNKV
Ga0214921_1000503643	F082109	N/A	MWSPIEIFLLTFLLNHSPMKSERLLVREVIENREAQSLIESVTLRDDFQY
Ga0214921_1000503644	F062446	N/A	MTFNIKRIIGFILYCLFWIAIAYFFVGCANTSYKTIPNAMSEDAQDYPTKYNMMDSPDGRRNPNAQINIFGATY
Ga0214921_1000503647	F048101	AGGAG	MTKKMKMKKFKNIKEFLKTCSPDEQEYIYDLYNNASVEDLIDLLFEYLPADDTIQEIQEYREEMEWDNNEAKKSNKPKRKCDCDFVGCQGC
Ga0214921_1000503651	F026210	GGAG	MSPILGANPLDYDAKYPQTADTSVNEDAKMFIMERNQGKEVMFQIDDGTQYYGRISYVPNSEHYCVIVDRNGTPWEWYVREEAVRFVQDISIKI
Ga0214921_1000503655	F011914	GGA	MITNNQIKALDENELAYLYYCLNSEWDSLNMGYEFDMYILRAFKNNTIHKLLNKYSTNLTDDNKGLIMQILNKLESNI
Ga0214921_100050367	F104483	GGAG	MNKKIIDKIDLVIEEINYLQELISFDTSDSSEHDLDSVVNLLAEIRGKVTNEEDEVEKIDLKQL