NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10004716

Scaffold Ga0214921_10004716


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10004716 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19832
Total Scaffold Genes48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)36 (75.00%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)8 (100.00%)
Associated Families8

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000447Metagenome / Metatranscriptome1128Y
F006385Metagenome / Metatranscriptome374Y
F007691Metagenome / Metatranscriptome346Y
F009531Metagenome / Metatranscriptome316Y
F011487Metagenome / Metatranscriptome290Y
F017133Metagenome / Metatranscriptome242Y
F040623Metagenome / Metatranscriptome161Y
F099300Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000471621F017133GGAMTNSIFGQGFATLSDYPKGLMNLCPCGQVVLAPALYHEGFTWWENPNKCKELFEGVK
Ga0214921_1000471630F006385GGAMILDNGTLIAIVIALAGSSIMMLVFWKQNIEQQKEIRRLQTALRTERLKK
Ga0214921_1000471632F000447AGGMGYIEIFRIDNEGAGWVDLSEATPSELLDLEIGLFQEGAI
Ga0214921_1000471633F099300AGGMAKMKTLYTEIANCEQCYGQGWHFWAQGEDFDTESCDCNPHQLFITKENN
Ga0214921_1000471637F011487AGGAGMTYENDEMLDEYYATTCPSCKENSIDEYEEKCTHCMLEEMSAHYNEDIALEMSLGLDY
Ga0214921_1000471645F009531AGGMTQQVAIYEMNYSCSPGGVDCWEATIQGYGTSTTASDFKTAGQALNWVLDRYPDEMLELVVTSLPAYEKEYA
Ga0214921_1000471646F007691AGGALNTINDLINEIYDDNFSHLEFEENMGGTDCDCHIHITLNTIVKYAGIEVG
Ga0214921_1000471647F040623GAGGMKVRISLEQTIDLEDAMSNDIGFELYGPPDMSNDDKIDYLMARFAEDIDTMVKYDEVLGNISIEYIED
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