Scaffold Ga0214921_10004461

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10004461
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20579
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (39.62%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (41.67%)
• Associated Families: 12

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024040	Metagenome / Metatranscriptome	207	Y
F027756	Metagenome / Metatranscriptome	193	N
F032536	Metagenome / Metatranscriptome	179	Y
F044916	Metagenome / Metatranscriptome	153	Y
F048123	Metagenome / Metatranscriptome	148	Y
F050171	Metagenome / Metatranscriptome	145	Y
F062446	Metagenome / Metatranscriptome	130	Y
F062447	Metagenome / Metatranscriptome	130	N
F078229	Metagenome / Metatranscriptome	116	Y
F082149	Metagenome / Metatranscriptome	113	N
F096610	Metagenome / Metatranscriptome	104	N
F104482	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000446114	F044916	N/A	MGRKKVEKSRIEKGLEKEEKTFSIMAKKIIDAIKDEKELRAFAKISLEILYKENPNLFADHAKLKLKKK
Ga0214921_1000446118	F027756	N/A	MKLKDLIDRKILYLNFPINRYAIQEGKVTEISPAEKCIKINADWHLISNIRIIELFSEKERPALGFN
Ga0214921_1000446123	F078229	N/A	MSKIKYTYYIEQDKDKDGNLVQGWSIYKTPLVKTIKVKTFKKLKDADNFLNNYESN
Ga0214921_1000446125	F048123	GGA	MKPRYDFTKGKLISYDGEIIEFAGSAVVDKYPDQVQEIMDLFDFKKGEYLVTDESSVGDFEKQNMNPKKLAKFKKKYGFSLTNKSNISKIAERMYNFRPF
Ga0214921_1000446126	F104482	N/A	MKKQKNKMTSEEFEKAMKDQGRLVSRVYCRFTFKGMGLYILNSFKFKLFPKFFYMNGKYFTECGFNWLGWIFEFQWNR
Ga0214921_1000446128	F032536	N/A	MSERKTFEELMRSFRFHKNPIINWFLGEVNYYSHTYLNVKWGLKNKLQRLIRGYSDSDCWNLPQAIAKFILPRIKHLRKNYNSLANRHHLIVDGKIVPYVGEQNNFEFNETLGCYKDKTTGMEISLDEKEYEYVLDEIIFALQMIVDEDNIDINLDRLYEVYPEGFDPIEDRQMFLTPQGDGTSLVEFESKDNIQPDYSKLNKAYERQRNGLILLGLYFKDLWD
Ga0214921_1000446129	F062447	N/A	MKHKIFWEKNSRVKGVVPSAQIINKTSTDKFPCDAVTIRMYNLNSKNPVATAYFYGKEAQGSSWNGSNYTYAETKLMVTFNKDKEGYSFNGGVKSFSLQDIKEVLDSVRETLNKL
Ga0214921_1000446130	F024040	GAGG	MNIYVSGHNWLAKVDIDAEKINKTDWYNEACTRAVESVLDQEEKEGVDLKIIDYDDFGLGVILLTWDEKNSKNEGEHIVLLTSNVLANAGRWEEYNFVKDYEEKAKKEGL
Ga0214921_1000446137	F082149	AGG	MKLGLHIDWCIGRWFGRSNNLEIKVFLPTISLGINNDYDDKWFGFKLNLKTDISFESYEYGKIFTLILFGFGVKVSKFNL
Ga0214921_100044614	F062446	GAGG	MIFNPIKVIAFTLIVLAWILMTFFFVGCANSSYHTIPDAMCEDSQNYSTKYNMMDSQDGSKNPNAQVNIFGATY
Ga0214921_1000446144	F050171	N/A	MGMFNYIRVEQDLPLNDELKALNIDFKKEEFQTKELEDNVMATYIIRDYRLFELKVNGHWEDNPDYVLGNGRFREFFDKNKWVKDSEEEAFRDDYTGTFTFGTYVLGQDKESYDWFPDWKCVVVQGLLTEISLVKPVDRNSSKARIELDQKFKKDLDDHERKMKCPVYSFYFKYYVKTMNFIEWKLSIGIVKIINFLNWLQWKGIRKVIKILTPR
Ga0214921_100044618	F096610	AGGAG	MATRPKTYFVKMTDNTNGTFTISEAKVLDKVNQHARHWRSFDKRKLTSKLRNADLLTK