Scaffold Ga0214921_10004273

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0214921_10004273

Scaffold Ga0214921_10004273

Overview

Basic Information
Taxon OID	3300023174 Open in IMG/M
Scaffold ID	Ga0214921_10004273 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	21137
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (78.95%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)		Depth (m)	2
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002501	Metagenome / Metatranscriptome	553	Y
F031101	Metagenome	183	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000427310	F002501	N/A	MWCGKCKGRVFVDRVFSQKLHMELFCIMCGKRWMCNKETSAFGKWLESKETANQKAYGIS
Ga0214921_100042732	F031101	AGGCGG	MNDLFWYKIKLREAVSTTAMENGWDNEKCKEVFDNLMNQYLVSRGFK

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