Scaffold Ga0214921_10002940

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10002940
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26896
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (77.55%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020909	Metagenome	221	Y
F025466	Metagenome / Metatranscriptome	201	Y
F058137	Metagenome	135	Y
F096878	Metagenome / Metatranscriptome	104	N
F101146	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000294015	F101146	AGGAG	MAYTVISDREVCGKKKGESITDKELVDAGVSAEALIAANHIKASNTAQPSIKPAIEGVTN
Ga0214921_1000294028	F025466	AGGA	MMFDKVKIKAIVMTYLRAGIASVLALYLADPNQPVKNYLVAGLAAVAGPVLKALDSKSTDFGRGSK
Ga0214921_1000294035	F058137	GAG	MCGVVMVGKKIRSVRVSDQVWAKAKSKAQSEGKSVSEVIVDFLKGYIK
Ga0214921_1000294036	F020909	N/A	MECRTGMERGWNNRMITKRGKRVRAIAIAVGIIVIWQVASNLWWVGIDAPNAEFLGWCWGSMSECVVL
Ga0214921_1000294041	F096878	GAG	VGLLINRDPLFSVHNALNGDLVIYLEERDANLDVVEDILAAVPLVQLKGIQSLILHDLKSIESARLMDKARSAVPDLAIKLASVSESEALTLAEQLITAVKYARAMRSQPLATKLELVK