Scaffold Ga0214921_10002465

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10002465
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29971
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (64.44%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006891	Metagenome	362	Y
F007747	Metagenome / Metatranscriptome	345	Y
F020510	Metagenome / Metatranscriptome	223	Y
F048158	Metagenome / Metatranscriptome	148	N
F081048	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000246534	F048158	N/A	MARPVNHDVKRAMAATGKSRATVYLQRNKVEAQPLVKAKGGGLDVEIQRLEDLAASLGESAKDDTRADRSELISNYTKLVEALRRMKGDRPDIDQAEGTMVPVDEADKVLAARDNALVPLLKGMAKRLAPICANRPAVEVEAEVENEVGQIMRQVEAAL
Ga0214921_1000246538	F007747	AGGAG	MKDLGKITFGKARPAPKQVLVDVTYDAKTAKALHAFGMKQLKKDQEAVIEYVIKKALEGLVKK
Ga0214921_1000246539	F081048	AGGAG	MSVKRITWQIEILERAKKSLADGRVVVTRCRLDLALHIAKEMLKRAKVYQKRDLEKKK
Ga0214921_1000246542	F020510	AGGA	MTLAQLLSMFSARIIGTYTPEQYANCVQEARANRMRWGMGQW
Ga0214921_100024656	F006891	N/A	MSTDQVAELSERLSLVRESIARIETRQGVIMDMLERSQASLGEYHGRLTNMERDAHTIKTKLWLVALVSGAVFSTIWELIKRRISL