Scaffold Ga0214921_10002396

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10002396
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30555
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (50.94%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001957	Metagenome / Metatranscriptome	611	Y
F013393	Metagenome / Metatranscriptome	271	Y
F051684	Metagenome	143	N
F076100	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000239621	F013393	AGGAG	MRHVSGFSNSTKIRFIVNGFGMYGTINDIYTKIATASHGAALRLAIQKLAYDRRHSSFTGDGRPVGVSITHEGIDVQITLMAN
Ga0214921_1000239645	F001957	AGGAG	MNSVDMATNLIFRAKNLQEFTVTTELPDDFRFNGLIPYDIKIDGDQIAAKVWAIAFEEAVDLFDQWLTTCK
Ga0214921_1000239647	F051684	AGGA	MYVWIIKHQDVISGFVSGVSLMVAADYFARGDMTYGSLSLFVSVANLLLSGKKMGQHGQS
Ga0214921_1000239650	F076100	GAG	MKYITNKFDNIRLPYAKDLLEWLQQTYPHSQYQVKD