Scaffold Ga0214921_10002258

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10002258
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31562
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (89.47%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019438	Metagenome	229	Y
F046909	Metagenome / Metatranscriptome	150	Y
F093280	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000225828	F046909	GGGGG	MPPPSKNLCLMMAKINYPRDEKLSWTWLFAWGFHEAYVEGWYEGVKL
Ga0214921_1000225834	F093280	AGGAG	MNPKIKDLIKATGCADVGELFDRSIRLGKVFYQFKQEHGRPMNATELRYLEAVVHATPQEKT
Ga0214921_1000225837	F019438	GGGGG	METILTTIILGGIGFIVCGLVFVGLMHLWFWMDENERGNK