Scaffold Ga0214921_10002203

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10002203
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32067
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (62.96%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (61.54%)
• Associated Families: 13

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005584	Metagenome	395	Y
F005846	Metagenome	388	Y
F006138	Metagenome / Metatranscriptome	380	Y
F009142	Metagenome	322	Y
F011284	Metagenome	292	N
F012113	Metagenome / Metatranscriptome	283	Y
F012433	Metagenome / Metatranscriptome	280	N
F023059	Metagenome	211	Y
F025739	Metagenome / Metatranscriptome	200	Y
F026543	Metagenome	197	N
F035218	Metagenome / Metatranscriptome	172	Y
F041645	Metagenome	159	Y
F045612	Metagenome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000220319	F005584	AGGTGG	MAGSIPTSYFATDLSYMIEDLYQSVTGLGSSTVSASVTDLTTASELEIGGEVFRVTQSLVVLASGISAPVIGSLCTVSGVERMIGGFSQSTDGLSFTIELAEITT
Ga0214921_1000220321	F009142	N/A	MNNSVQINVEDALDNILANVSGLNVYKTNRVGAKLFPFATISASVGGQLLGNYTGVYEVAVTIDYSDTAAKISQADFDAEYCSIFEAFYSETPPLFTKIQSNIVDTKVYTARIIGQTPTIRTAKRAWQRGLKMSLICTPSELDDGLRSLNFSQRQNSMYVAVI
Ga0214921_1000220323	F035218	AGGAG	MPLTKNPSNIDSFLFASGRMKMYRVGLAGSYTKVTGTGGVASIGNTGGYNINLNAGSAANGTSKIGYYDPTAALMTASAGKIDYSKRIRFSIGGMMYLASTNSVIRMVFGGTGNATDAPLAGVDGLTIKGFGVEFALQSSVIQARLIGYNASYLTPTSYTTLTNGFGLSASDNRFFGVVIESDGLGNINLYGAESQTNPSINIGQTPLLTLTGGPTNDTSTNRFGPEIHCSNSSSTPSATPSAILQSTHWLLDVQ
Ga0214921_1000220324	F045612	GAG	MTHQYTYEDFMSSLKWLEAEGYIEKFYDNNGELCVRICEGAEDCEV
Ga0214921_1000220325	F012433	GAGG	MSADQVADLRERLARIEERQVGLISILERHTSELAQWTNKINTKVDTLERDAHTIKTKLWLVALVSGAVFSTIWELIKVRVFPR
Ga0214921_1000220326	F006138	GAGG	MAAVTIGTSNLTFATVSEGSIGLVQSFSEARNIEKNEVRNNAGDIVAVGYYNATTSYSLSVALIGAYAVTAGAALAALNNATTAIGTGSLRIDSITINKSNDAFVTLDISATGYPNVS
Ga0214921_1000220327	F026543	N/A	MTEAYWGTTNIKVASAVASFGAKPRSIDPVTRTIKEDGSTQATFWFEAGAGAEAKAEMERTWAEMKSDPESPIRYVRAALENRETFLGLLKRAVPVRVIQRGGQTLLISENATSEQRRAILKHL
Ga0214921_1000220332	F041645	N/A	MASEIIGSSINSKVLQRQNFSKEPNGLETIIEAYAIKTVNRDTIVPERFTLHSSFSSSAKKYARMAVDSVVTEEQDGGITQMLVTFVGLTTSTGLPPPIIRLIPTAGEGVYGPPLVIEAEYVTDVSETEFMAGQLSQNNGAIPVSTFTPTIKMPTIINGTTMPRDPREPFFQEGVGLLAQYGGYCYLSMSCERRGLFLVARNTFHEVQELATISRGTLR
Ga0214921_1000220337	F012113	N/A	MNQLLAFVQSQDIFAWVGALVALLSAVIAVASLIPGDEPETTLRKVVDFLSKFSRK
Ga0214921_1000220338	F023059	AGGA	MWEAILASLAGVIGIIAWWTKNRAKTRKERDDEEIAYKRRLRDTEVDSWIHRR
Ga0214921_1000220339	F025739	GGA	LICGCATTRPYDIGEVPNQDSITDYIMRWDKLDRTKATPEEYRQLFGQSLKTISRLVEENEKLRKRLDQ
Ga0214921_1000220341	F011284	AGCAG	MTSEQSVEKTQKHFTKKHELHLTTLQVAAVESMEKKYKRGVEEHGGTKLWEMPAVKLVENAIEEATDQLTYLLTLRSQMHIVMELARDGCTDETLTNPRARECCHLIYTTLTGQSKPPL
Ga0214921_1000220345	F005846	N/A	MKSLIPLPAKPMGSSAPASHEGFAKRSAIEGKLNGWRGLFNQKTGIGYNRHGKIASNHNLMVERLSNAGIKAPYIDCEIMGQRTKTGKGTIVVMDAFDPANPKPYEERMKEIEHLEAVTFDVQDNKLLRFVRLAHHKINSIWEEMNYQNNKAGEIIWEGFVMKSLGKYPFITNPNYVSPEWQKQRIRW