Scaffold Ga0214921_10001970

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10001970
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34346
• Total Scaffold Genes: 64
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 54 (84.38%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011483	Metagenome	290	Y
F015970	Metagenome / Metatranscriptome	250	Y
F022157	Metagenome	215	Y
F042184	Metagenome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000197020	F042184	AGG	MELDIDFCDLEIDIKAWVEWEYDPDYSPNEGVYDKFIWVAYLQVGNNRIDITDDLSAKECKQIEKQIEESIDDSF
Ga0214921_1000197021	F015970	AGGAG	MTAFNKAKWEAYQGLNDDDIMDAIDGSVAIPLAIKSGDWEYAFQFIKERIDNKMQRRAEFYLYSKTNTPSIDDDNELRTLRTLWLKNEYRGEKDEA
Ga0214921_1000197027	F022157	GGAGG	MWDVLVTFMLMLFGAFVVIAFGAILIWTLYLLQNEADND
Ga0214921_1000197032	F011483	AGG	MTYDLVAYLRSEIKELHNILHETQLALAQANDRLNRRSEPLSDERIYTLYRRSLDWRQLARDIEADHDIE