NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10001706

Scaffold Ga0214921_10001706


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10001706 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36983
Total Scaffold Genes61 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)45 (73.77%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000340Metagenome / Metatranscriptome1267Y
F015839Metagenome / Metatranscriptome251Y
F016520Metagenome246Y
F029042Metagenome189Y
F032632Metagenome179Y
F079811Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000170614F000340GAGGMNWADVMKAVIPIVVASLAWLLGEVSSFNTWLTKIEGSMPALITSQGVPTDSPLSAEARHKLKEEIYKEINSLFVKVTLLEERQKGK
Ga0214921_1000170615F029042AGGAMIDPITIGAAFAIAKSTIAGVKEAIQMGKDLQECSGDLIKFFEHRDTVAKAAVHEKKKPQSDMGQAVNAVMQAKALRDAEKQLREQLIYSGQGDVWEAIQAQYNMIVANRKREEREAEAKAKRKRENLAETVNILLIGVASILAAGFVGWGTFAFIMYKLRN
Ga0214921_100017064F079811AGGAGMKAVPAKYFAFPPYCAKDLGGKMGWWGVINRDGFNCLTFPEKLGAVVTTEERAKQIADEWNKKFL
Ga0214921_1000170653F015839AGGAMTNAIYTAYAASDLFNAGYSFDGHAYIAEQFYVIIENAAGRRFRHTATFNGTEQLICEDTGDSCFPDYRATAEAKAERLAARVNAAFAAGKDVDWTYWGEIDPAYGSDEYISQGTEAQRCFAEKAAA
Ga0214921_1000170655F032632N/AMKHSKYYHYPEVKNARINARAEAALDFILALIIGASLAVLLIAWWTA
Ga0214921_1000170656F016520AGGAMNTTPVCPPGFIEFACELEGVDLVCHLEYIPSEYGSQDSMGLLYEPDSDQSMDLVNAYIAGTDIDIGHLLLQYLVDHITTTALEDMKNDH
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