Scaffold Ga0214921_10001585

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10001585
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38395
• Total Scaffold Genes: 64
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 54 (84.38%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000368	Metagenome / Metatranscriptome	1223	Y
F005558	Metagenome	396	Y
F012770	Metagenome / Metatranscriptome	277	Y
F015702	Metagenome	252	Y
F020684	Metagenome	222	Y
F020863	Metagenome	221	Y
F028458	Metagenome	191	N
F030732	Metagenome	184	Y
F033006	Metagenome / Metatranscriptome	178	Y
F079979	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000158510	F000368	AGGAGG	MEQFKQLSLTWFRAAAASAVALFLAGESDVKTLAMAALAGFAGPLLKWLDNSAPEFGRGS
Ga0214921_1000158516	F079979	AGGAG	MIREEEDDTTQEMRAFVLLELKQETAKLIEKIEAAKVPITDEWTEGVNAGLEWAVRILKKDKSAS
Ga0214921_1000158517	F020684	GAG	VWTYALSTTEEATAVEVGYQRQKPYFGDPTRNINYSEGDLWEMWQHVVCAGSELAFARMVGKKHFVPHFNKWKSELDIPGIGEVRYSFPPIKGLRYTTRDEDDLIYILTTGGLCNKERRVAPDWKGPDYVAVGWMYGKDCKKDEWKYNEKTWYVPIEYLNRMETLPNAITE
Ga0214921_1000158520	F012770	N/A	MNIEDTPPHNHCNDCNITFPDSFALIDHMLEDDEEFDPYYLLPSGFKLMLGSMLRFLFDNADDPDQIKLITQSTYVTLFASENGYDLVDELVEDMIVRSALQDFDRDLQNLLAEEPDDNEGGA
Ga0214921_1000158527	F030732	N/A	MFVVTVMWDAETREVGWYDLKQECKECGAISTAPTPMDWRDE
Ga0214921_1000158532	F015702	AGGGGG	MIKEIELEYTVNNLVQLSRKVWGDNAIEYLAGRLESVITYNQMKVLIDNLKEEIDE
Ga0214921_1000158534	F005558	AGGAG	MSQDSISWSELAELTHETQVDKFGFCSCEDNEGRENPYTDCPTTGENE
Ga0214921_1000158535	F020863	AGGAG	MQTKMEDLHRLVAVLEELVKPLLEGEEVPDVYESMKRPHLVLQEGSKTYGRAFRIHFTGGSKYGSGHWEPRGFSDYLGGTKAEAERTLRSLITGIRTGQMIAERGKE
Ga0214921_1000158547	F033006	N/A	MRWVENNFFDHLDKFANSLGYENYEIAIPLAMVPWESPEDRDIFILTITGNEVQGGSPDTFRASEVK
Ga0214921_100015856	F028458	AGG	MSKVNKGTVALGWCDNGNTDGKFTEGMVSIALQAPANGIEITHSMRVQGNQIGRQRQVLFDYWADQIKTDWLLWVDSDIVMDIHVLTKVWDAADKVGKPVITGTYFISKQNEGTLAQPFPALFHNVDEHTLRHVHPLPENQVIPVDSAGLGFTLMHKSVIPALRAKYPDQSLFAEQEGIGDKFVGEDIVFFRKLKEAGVPLYAHTGALVRHMKRFSLDADYYSLYWSWQTLKKQIEQNKP