Scaffold Ga0214921_10001567

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10001567
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38666
• Total Scaffold Genes: 67
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 54 (80.60%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002722	Metagenome	534	Y
F016149	Metagenome / Metatranscriptome	249	Y
F026194	Metagenome	198	Y
F032583	Metagenome	179	Y
F064523	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000156710	F002722	GGA	MAGRTGVRSTLYTFLTTPTISGLNQVFTSFPKRINYQVNSTAGQLSRAAVVIFIQSERESRIAVGGATNGWKRVDYSVILQVYQHSMERDSTAAMTTFDTLIDNIKTRLRSDHNFGDTTGTLVWQGAEPEINTTYGEPATDNGGATETFAEIQFDVTEMIQA
Ga0214921_1000156712	F016149	AGGAGG	MRRMVAPDRGVRETVVGNTTYQPSKNGIYAVESSKHADAMKREGFFEASLNPISKDDGQKGYCCVECGFNGWFRKCGRCGHESTAIQKDGD
Ga0214921_100015676	F064523	N/A	MADRFGYTPKEVDDLPAQTADWLLAIAATVEEVKIEMAERTK
Ga0214921_1000156762	F026194	GAG	MAYINQPPDLRAIQADIEARLRKLETAQRFTVPIVTTDPTNPRNGDMWYNSTTTTLKFVNSAGIIKTITLT
Ga0214921_100015677	F032583	AGGAGG	MSKQVKLPSGATVTLKDPSLLRVKDRKRVMKASDSAEGELSRALQLGDALIAMLVEEWSFDLLIPSIKMESLDELEIADYDALVEATKDAQDALFPSIAKTIKNEADPKADTTNSKG