Scaffold Ga0214921_10001452

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10001452
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40427
• Total Scaffold Genes: 77
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 61 (79.22%)
• Novel Protein Genes: 15
• Novel Protein Genes with Ribosome Binding Sites (RBS): 14 (93.33%)
• Associated Families: 15

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000369	Metagenome / Metatranscriptome	1222	Y
F000376	Metagenome / Metatranscriptome	1216	Y
F000473	Metagenome / Metatranscriptome	1097	Y
F000671	Metagenome / Metatranscriptome	945	Y
F001280	Metagenome / Metatranscriptome	732	Y
F002501	Metagenome / Metatranscriptome	553	Y
F004006	Metagenome / Metatranscriptome	457	Y
F007921	Metagenome / Metatranscriptome	342	Y
F012975	Metagenome / Metatranscriptome	275	Y
F014017	Metagenome / Metatranscriptome	266	Y
F016396	Metagenome / Metatranscriptome	247	Y
F018177	Metagenome / Metatranscriptome	236	Y
F026561	Metagenome / Metatranscriptome	197	Y
F073544	Metagenome / Metatranscriptome	120	Y
F090386	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000145210	F002501	AGG	MWCGKCKGRVFVDRVFSQKLHMELFCIMCGKRWMCNKETSAFGRWLDKKETANLKNYGIS
Ga0214921_1000145219	F004006	AGGA	MTDDIEGLVTSISMNQVLVAILEEHGKLTVPTLRFLDANVDNKELVIDYDELGPSFTFSLREKNAIRSDSN
Ga0214921_1000145222	F018177	AGGAG	MPNINEFLNKPEKIFPSELEKIGGTKPCNKCEKDSEEYFWDAINMTISWECPNGHKNSYVVG
Ga0214921_1000145235	F000369	AGAAG	MSEIELSEHFDRMNRVVEELLKGSTPTQIATITGIQRKEVLELIDDWKDVVHNDSNIRDRAREAISGADQHYAMLIKEAWKTVEDADTSGQLGIKSGALKLIADIETKRIAMLQSIGVLENNEIAAQIAETERKQDILVKILKETTSTCPKCKMEVAKRLSQITGIIESVPVEEADVV
Ga0214921_1000145237	F000376	AGGA	MSTYQEKAKECKCCGKHVPLPTVLKEYNEIVLCPTTFTNVIEYKRIWIAAGHRPMGNIRKHFSEYVQQIVEETIDKNEDGTL
Ga0214921_1000145252	F012975	AGGA	MLYLTLKGVEVFIERSKTKSQESYWDNYDLLIWKQNPGGFTNLKGMFRKDQWGVTERIAVNEQGIWKLPSKYVKHFK
Ga0214921_1000145254	F000473	AGGA	MEFINKDKDHFKYGVNEWTGEPNKPVFYTPEMAKRIRDIKKPDIHLQMDIVRYPDFLTIRLYEDNFLQYEGIKKEMVIDYVGKVKKLIESYGVRCELEGVPSARILRNN
Ga0214921_1000145255	F073544	AGGGGG	VREYYEIIKIVFIHAERVYGSVESLGLYASKVKYQKDGIEIEEVLENDEFTIMDEIVFEHIEESN
Ga0214921_1000145256	F000671	GAGG	MEKILCYSCNKTKNKLNVRKSILIPINLLMCETCISSKFEPRWVVILAGRQLGSDAVKEFIIKKKYIGNEIAASELLV
Ga0214921_1000145260	F016396	AGGA	MRKSERLRLLEMQVVRLEMLVELYTQTLTNLLESQGMQSPTQLDAGKWYQAKLNKLDNE
Ga0214921_1000145265	F014017	GAG	MDNLTEYLHEKHRKKIADEIRYLELPPEWRPHEVIRYIVRIIEKNNG
Ga0214921_1000145270	F001280	AGGAG	MCDVCGCGALGSSTGIVPVTITDVSRDGESGLTLDMTSTPEQTRQFINE
Ga0214921_1000145271	F026561	N/A	MSNFTKDDGTGMTPPPAAGSASGAVTSREATRKYPKQGVKPRMKIDINSHGIRRETSLDPKPKKTRPKKV
Ga0214921_1000145273	F007921	AGGA	MIDWLVNRIFRWDPLRKAIFDEVRLYQSIDKAMWEHDRLYPTNLTWSEGNRWYGWTYNPQLKRYYFDDIGNESLMGLWEDQWLKEADEGLLK
Ga0214921_1000145277	F090386	AGG	MAYSRFYDSDIYIYPSVFGWIECSGCFLNTSPDEDTIFKSERIHDDKTLLMHMLQHRISGHNIPDGLEA