Scaffold Ga0214921_10000881

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10000881
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 53416
• Total Scaffold Genes: 87
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 72 (82.76%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004793	Metagenome / Metatranscriptome	423	Y
F006261	Metagenome / Metatranscriptome	377	Y
F008607	Metagenome	330	Y
F011482	Metagenome / Metatranscriptome	290	Y
F014841	Metagenome / Metatranscriptome	259	Y
F027488	Metagenome	194	N
F035280	Metagenome	172	Y
F054812	Metagenome / Metatranscriptome	139	Y
F068570	Metagenome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000088114	F004793	GGAGG	MNLIEAKQIVGNQPTWALKNMVKALNMLPWLNTEEDELRLQAAKIVLKERK
Ga0214921_1000088117	F054812	GAGG	VDNQQVEQKFDDIIHPKVINQVIKQKRPPAKFPELRYLWGVALLGSFVLIVIASTIQTLIQG
Ga0214921_100008812	F014841	GAG	MADEEKRPSAIDDALAEIAQIAFPEPAICTGWVLVSEWMGSGPKDYWTLTLGDDQQPDWRHLGLLHHGIKTWEDDDLGREPRETDTESRE
Ga0214921_1000088132	F035280	GAGG	MEKQIGKYWFCCGRKSGFGIGFDVSKYFWTIDLGFWYIGQEF
Ga0214921_1000088140	F027488	GGA	MLSALWRRFVSIRWITKVWSDSPYNGTRLLIHLALADISHDDGRFFASQKNLSEKGRCTVEYVRKVINEMVADGHLRIVTKGNSRGNATVYQLLNKKVPNTIGESLPIMDDELPNLDTPVSPTLEVQLPNATPYHPSYTSVLSTTGETAPAVYAPGELAARTWWEKLITKPIGKSAWHSLLEICKAAEKQGYTTDQILMALNYIGTVPSMRQMDLVLRGRGVKTKHEQSAERAMELADKLRDEPI
Ga0214921_1000088145	F011482	GGAG	MEHEPTLGEIMRRLDDLTTEVKQININIGETYVRRDVYSADSQRITQAMETITDRLEKMESRSEWVVRTVGALFIATVVGASIYVGQIIGF
Ga0214921_1000088150	F006261	GAGG	MAIRSSGYTVTEPIQIANAGVWSFTAPENPTIRVVGLAVQQPLKSDIVESYGVFKPLGGTKTVVITSSIYGVDGNYQITVQGEDDWDALYPVLTYQGILHVHDPLGRQKYVRFVDRTWTESGPIGNLIRDVKVNYYEVDAP
Ga0214921_1000088160	F068570	GAG	MAETQQPMSSSDAGNATDSSSKARRAHGASDVPVVNPRINQDEFTNALDDLIGLGRINDGCSVGRITRELPEPSQTKFKEALANEKVNSARLVEVLATFGITVGSDVMRRHRRRLLGKDGCKCPRES
Ga0214921_1000088163	F008607	AGGAG	MANAIYTIVAEFMTDSVSFYPKSSVDKYNKPTFGSLLTVTGRLIYGQEKNIDAQGVEVIDVGRFITYGPSTSLTTNHKMVVDGESFIIHNVSDIKDENGAHHTVVRFGR