Scaffold Ga0214921_10000448

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10000448
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 76758
• Total Scaffold Genes: 147
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 58 (39.46%)
• Novel Protein Genes: 33
• Novel Protein Genes with Ribosome Binding Sites (RBS): 14 (42.42%)
• Associated Families: 33

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009669	Metagenome / Metatranscriptome	314	Y
F010817	Metagenome / Metatranscriptome	298	Y
F010897	Metagenome / Metatranscriptome	297	Y
F011914	Metagenome / Metatranscriptome	285	Y
F014229	Metagenome / Metatranscriptome	264	Y
F016774	Metagenome / Metatranscriptome	244	Y
F020649	Metagenome / Metatranscriptome	222	Y
F020860	Metagenome / Metatranscriptome	221	N
F022820	Metagenome / Metatranscriptome	212	Y
F024040	Metagenome / Metatranscriptome	207	Y
F026210	Metagenome / Metatranscriptome	198	Y
F027756	Metagenome / Metatranscriptome	193	N
F030670	Metagenome / Metatranscriptome	184	Y
F032162	Metagenome / Metatranscriptome	180	N
F032536	Metagenome / Metatranscriptome	179	Y
F032572	Metagenome / Metatranscriptome	179	N
F034466	Metagenome / Metatranscriptome	174	Y
F034827	Metagenome / Metatranscriptome	173	Y
F036564	Metagenome / Metatranscriptome	169	N
F039497	Metagenome / Metatranscriptome	163	N
F043789	Metagenome / Metatranscriptome	155	Y
F044916	Metagenome / Metatranscriptome	153	Y
F047507	Metagenome / Metatranscriptome	149	N
F048101	Metagenome / Metatranscriptome	148	N
F049419	Metagenome / Metatranscriptome	146	Y
F062446	Metagenome / Metatranscriptome	130	Y
F062447	Metagenome / Metatranscriptome	130	N
F064403	Metagenome / Metatranscriptome	128	N
F066486	Metagenome / Metatranscriptome	126	Y
F071966	Metagenome	121	Y
F082149	Metagenome / Metatranscriptome	113	N
F104482	Metagenome / Metatranscriptome	100	N
F104483	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000044810	F062447	AGGAG	MKHKIFWEKNSRIKGVVPAEQIIDKTSTDKFPCDAVTIRMYNLNGENPTATAYFYGKETQGTSWGGSTWSFPETKLMVTFDKDKEGYSFNGGLKSYSLQDLKEVLDSVRETLNKV
Ga0214921_10000448103	F047507	N/A	MINKLNKLCNWKSKTLLVGLILIVSWIACLKIGFELKKHYSITNLPNSCFIDSMIYASRCNLLLISSSDTWNSVYGFTFGYKDDKEAILGHAVCVFEYNNNLWMYDPNWGTSPVCKIGDRKRYKEKIRLYINKTYPIIVIEDFMLNDWTYVQKTKKNKMNKTYKEVSIHLDEDKKE
Ga0214921_10000448105	F034466	N/A	MDNQLRNILLNNYEKSLPSKRDTEDFISNFRQYRIKKKAQEKTHYGLVFACILVLTMIGSIVAKQTKNNLDIQTAAGLEKCNTQLMEKK
Ga0214921_10000448109	F020649	N/A	MVIKIKNWWKDLKSYDRFFFISFVPAMLFTLWGLSDLYINYFDLLSREDHLQFFLRIFFPISVATLITVLERNKRQKLIKDIKNYLKQ
Ga0214921_1000044811	F032536	GGA	MSQKQTFEEMMQSFRFHKNPILNWAFGQSNYLYHTFLNSKWKVRNAFQKLTRGFSDSDCWNLPQSTAKFMLPRIKHLRQNYHSLANRHHLVINDKIVPYVGQEDNFEFNSTLGCYTDKTTGLGISLDQKEYEYILDEIIFALQTIVDEDDINVSLEEVYEVYPQGFDPIKDRQMFLEKQEDGTYLVEFERKENIQPDYSKLNKAYERQRNGLLLLGLYFKDLWD
Ga0214921_10000448125	F009669	N/A	MKTMLSKIFGPNWRSSSSGIATVVAVCTAIAIHSDPSLVAFLPDQAEVYILGISKLIAVVSGIIFALTVKDAAVTGGTVAQTTEAKDKTNGENI
Ga0214921_10000448126	F014229	GGAG	MNKLQLVLVALLSLFLGACATTPTGKVDPATSVSNALPYVKPAVVLACTVVLDQALSPSDRIEKAKMINHVASIVEGLTAGTAPTPAELQKSLTDYLPEEKTHWANYVTVIKDLYAQQFARLDGNTALAIKVLNAIASGCKDATASYVE
Ga0214921_10000448128	F010817	AGGAG	LKKFVSALVLNLLIVGCTTVTPNKIQDDKSSYDATTPKQYDKDNGGLISFIGDDALITKQARDRYNNLVEMYKIKFKKEKAIELKIDSGIKPYKDNFNNELYLIDSEHLVYFGVLNSWLKEKVPQDNIIDKTIDKINN
Ga0214921_1000044813	F104482	N/A	MKKKKERMTSEEFEKAMKAQGCFVSKVYYRITFKGMGLYILNSFQFKLLPKFFYMSGKYFTECGFHWLGWIFEFQWNR
Ga0214921_1000044815	F034827	N/A	MKYTITSQDTESLIEFDKIKEGEVFSFFDPESVQRGNHAIYMKIRVPNTTSVNILDLEDGKAYDFSNKKRNTINDPDEKQGNRVYKLNAKINIVVL
Ga0214921_1000044816	F030670	N/A	MKVIRYIKQLEDEFGNDLELWGAYEETCKDNYPSVDLIDAKLLKTFPSPYHARNWMENDGKNN
Ga0214921_1000044819	F027756	GAG	MKLKDLINRKILYLNFPINRHAIQEGKVTEISPSEKCIKINSDWHLITNIRIIELFSEKERPALGFN
Ga0214921_100004482	F082149	AGG	MKLGLHIDWCIGRWFGRSNNLEIRVTLPTISLGYKQEDDDKWFGFKLNLRTDISFESYEYGKRFTLIFLGFGVKVSKFYI
Ga0214921_1000044821	F036564	GGAG	MKLGRVCVDLNYIVDMDNQEMVERAIECLYEDLMQGVKYGNITNWIDVIEDKNAKEDMIPEFLLEKEND
Ga0214921_1000044822	F064403	GGAG	MTNPRSKILSDLKKAYLKEHPTTLVDRILGYLNNLTDFQLCQLYSEKYETNPKYMAEQFEFKF
Ga0214921_1000044823	F044916	N/A	MGKKKVDKSRIEKGLEKEEKTFALMAKKIIDAIKDEKELRAFAKTSLEILYKDNPNLFADHAKLKLKKK
Ga0214921_1000044827	F049419	N/A	MKLPKLDLLDLATTYIFFGLIYGTIITLTWNYLFEPVTFVHLSILQGFGMHLIARILFGNTNTNYISNFYSQKTPDLDKIDGYLKEIQADLDKEAEEVERQYEDLDKKD
Ga0214921_100004483	F039497	N/A	MNEEDNFNSKAGNQLRDTLYKDILRYAQESDMTAYQVIGVLESLKFDLLNAMRNAHIEEGDEDEI
Ga0214921_1000044834	F016774	N/A	MALKKPKIEFLTDHLASLNHWRDQLLALEKSYYSKDPEKERTIRNMINKYLDDVLAYNKNIKEKPKNKV
Ga0214921_1000044838	F062446	N/A	MIPKPIRIIGFILYCLFWIAVAFLFIGCANTSYRTIPNAMSEDAQDYPTKYNMMDSPDGRRNPNAQVNIFGVTY
Ga0214921_1000044841	F048101	AGGAG	MTKKMKMKKFKNIKEFLETCSEDEREYIYDLYNNASVADLIDLLFEYLPADDTIQEIQEYREEMEWDNNEAKKLNKPKRKCDCDFVGCQGC
Ga0214921_1000044842	F066486	N/A	MKNKTLSKKDPYHLKVGKFKKKNVFDTQVDMGDRMRDFFLGLGRRVITEDEFINIGFNYALIKGLGEAKKVKSKKK
Ga0214921_1000044845	F026210	AGGAG	MTQWIKANPLDYDAKYPQVAESTNDDAKIFVMERNEGKEVMFQIEDGTQYYGRIGYVPNSEHYCVIVDRNGTPWEWYVREEALRFVEDIGTKIG
Ga0214921_1000044847	F071966	N/A	MSLLGIHFDIQGYIFKPFYLILGALYFIVLLSLLASLYVMLYIRNTLEIVLKDIEKNRNKYKRMK
Ga0214921_1000044849	F011914	N/A	MISNNQIKALSEDELTYLFYCCKTEWDSLNMGYEFDWYILKSFNNKAIHPMLNKYSDNLTDENKGLIMQILNKLEANI
Ga0214921_1000044859	F032572	N/A	MNSTYQYIANYINKPTYFCYVVDRVVNTNPYLFTGEYNKKLINKKVWVAKQVYPMCMPEQYTYFKTLKELKAALNRWGASWVRA
Ga0214921_1000044865	F010897	N/A	MKLINTTSYCSEKLKEIIKWCLPQGLHLKDIRKIDFGNTKIGWHGRAWGSMRVHIAVPNYSIYKKPYKSGGFRGYLPVKSYSWEESLVELVAHEVRHIWQYKKDKFYHGIKKIRKYNMGTRAKLSEVDASLYAIRKIREYRKSSIKFNLV
Ga0214921_1000044868	F020860	AGTAG	MEITKAKKLKEGGYALYAVDPKTKTETQVGYIGENLTLEAWLPKGVKIENS
Ga0214921_100004487	F104483	GAG	MNKKIIDKIDLVIEDITYLQELIDFDTTDSSEYDLDSVINLLAEIRGKVSNQEDEVERIDLKQL
Ga0214921_1000044877	F022820	N/A	MKSENRLSKILEKRILQNEDPKTIAQIDKFLNNLEVVFVKWAKAHPNWKESEE
Ga0214921_100004489	F024040	GAGG	MNIYVSGHNWLAKVDLEDSIKKSDRYTEATTRAIESLLDDEERQGVDLKIIDYNDYGLGIITLTYDEKDIKNEGEHRVMLTSNILANAGRWEEYKFLRDYEENCKEQGL
Ga0214921_1000044892	F032162	AGG	MKQNLKISYQTFGENNAYLLEGNIKQINHFFNSIYNWEGTNGKLHDMGNGKAFYFYAHPDDVMHALTKVALHSLVNKINAKGRKGGLLDLAKAKAQSIVDAMGQTCFLWGASSSEGYSLGTISAEKPSDYCGAVSNGRD
Ga0214921_1000044893	F043789	N/A	MKKLSKYEQLIANLNKASQDLKDASTKAIATLDAHAQKVEAIHQEAMTK