Scaffold Ga0214921_10000280

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10000280
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 100571
• Total Scaffold Genes: 102
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 45 (44.12%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009669	Metagenome / Metatranscriptome	314	Y
F010817	Metagenome / Metatranscriptome	298	Y
F014229	Metagenome / Metatranscriptome	264	Y
F020649	Metagenome / Metatranscriptome	222	Y
F028084	Metagenome / Metatranscriptome	192	Y
F032162	Metagenome / Metatranscriptome	180	N
F034466	Metagenome / Metatranscriptome	174	Y
F038565	Metagenome / Metatranscriptome	165	Y
F056412	Metagenome / Metatranscriptome	137	N
F080893	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_10000280102	F056412	N/A	MKRKTKLEILLGNLDKASADLKKAVEESQKRLDESFAKYEHKVEVAHHNSMIINEKQ
Ga0214921_100002802	F034466	N/A	LLVVEYLKEMDNQLKNLLLHSYEKSLPSKKDTEDFINNFQQYRIQKATQRKTHYSIALIVLLIITALGSIALKETTNKLDIQTASGQIEK
Ga0214921_1000028032	F038565	N/A	VTNKKKFNFPESLLKQIDECSFGGYIMFNFSSKGEPQVYTKFDNQINAMALLYYVNTWSQSVDQLNLEATTDQIAKKNLEEDDFNDSEEDRD
Ga0214921_100002805	F020649	N/A	MAIKIKNWWKDLKSYDRLFFISFVPAMLFTVWGLSDLYINYFDLLSKEDHLQFFLRIFFPISLATFITVLERNKRQKLIKDIKNYLKE
Ga0214921_1000028076	F028084	GGA	MKKLILILPLLFLISCSEPNYESRELSTKYPETPTSGSAYDVTEELYGKKK
Ga0214921_1000028079	F010817	AGGAG	LKKFASVLVLNLFLVSCATVTPNKIEDDKSSYDASTPKQYQKDNGGLISFIGGDALITPQARERYNNLIAMYKIKFKKEKAIELKADSGIKPYKDNFNNELYIIDSEHLVYFGVLNSWLKEKVPQDNIVDKVIDKVNN
Ga0214921_1000028081	F014229	GGAG	MNKLQLAAVALLSIFLGACATTPTGQVDPATSVSNALPYVKPAVVLACTVVLDQALSANDRVEKAKMINHVATIVEGLTVGTAPTPEQLQKALTDYLPEEKTHWVNYVSVIKDIYAQQFARLDGNTALAIKVLNAIASGCKDATASYVE
Ga0214921_1000028082	F009669	N/A	MKTMLSKIFGPNWRSSSSGIATVVAVCTAIAIHSDPSLVAFLPDQAEVYILGISKLVAVVSGIIFALTVKDAAVTGGTVAQTTEAKDRTNGENI
Ga0214921_1000028095	F080893	AGGAG	MNHTIKITDTNILEGEKANPQNCAIARAIKSKMKKKITNVSVLPTQVILTIDKKMFIAKMPKAGTNFIKRFDRGQAVNAFKLDLKFKKGFALV
Ga0214921_1000028099	F032162	AGG	MKQNLKISYQTFGENNAYLLEGSIKQINHFFNSIYNWEGTNGKLHDMGNGKAFYFYAHPDDVMHALTKVALHSLINKINAKGRKGGLLDLAKAKAQSIVDAMEQTCFLWGASSSEGFTLGTISAEKPSDYCGAVSNGRD