Scaffold Ga0214921

Basic Information
Taxon OID	3300023174 Open in IMG/M
Scaffold ID	Ga0214921_10000249 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300023174 Open in IMG/M

Scaffold ID

Ga0214921_10000249 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	106648
Total Scaffold Genes	165 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	134 (81.21%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

106648

Total Scaffold Genes

165 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

134 (81.21%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	(Source: IMG-VR)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales

(Source: IMG-VR)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.2611

Long. (^o)

-83.95

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010086	Metagenome	308	Y
F038232	Metagenome / Metatranscriptome	166	Y
F078718	Metagenome	116	Y
F091916	Metagenome / Metatranscriptome	107	Y
F092057	Metagenome	107	N
F100404	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000024910	F091916	AGGAG	MKDNMKKMVSDHNAMKSWHETSAKAAAEQMQDHIKAAAWHDSQVNMIKGMINEVPLDPEKKVSGVPTGGSASAPTSGAGMTSPTKEVALDPKTVKKSDLIEILSEHEGQFGKFDMAVEDIASFLLAE
Ga0214921_10000249106	F010086	N/A	MKLMANCIYCLSEYINERYEAGYEYCLDEKCQKIGLDVSEREFRKIYTPALLHKCNYFWVKKTELKSLNVRADLLEQKED
Ga0214921_10000249134	F092057	GAGG	MPLNYDISDIAMYKDNYDEAYTEYKQFGDTYKDVKPFLKGLIFSGGMVALGSITYKNVSEWYARLKMCEEMYNTYLTRELTEDGMDYVDKPLEAKELIKYIGLKTNHSTVTRGQWVKNVKRYQNVTLSHSQIQYRLKKLEEQFEKEVA
Ga0214921_10000249135	F078718	GAGG	MTINPGQINMYPRVSNWYETNFIEYRENSVFDKWHIEVAYFEADAEYTYASDKKMIMGGAYQRVEITDRLTGNFWEDAFLGETAEADANRWANDIVTKIKYGKVKL
Ga0214921_10000249142	F038232	GGA	MSKIDGDQLRSKIEKLLPNCSFDEDNEGQVIIYTNLKETANGNYKEMK
Ga0214921_100002498	F100404	AGAAG	MSDESFIEEDNDFVGTKDFDNICDNLISKVPVDSHREAYSVIYGHYKGWAPSKTIKHYNISEEVYSYYADLFDFTERGEKIMAGRKSKQDNIVSFLTGNVGKVVTPIEVSTNVEISLPTFYNFYNANRGYFKKVKRGHFEIVDPKVERANS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214921_10000249

Overview

Ecosystem & Geography

Associated Families

Sequences