NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10000248

Scaffold Ga0214921_10000248


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10000248 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)107027
Total Scaffold Genes176 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)136 (77.27%)
Novel Protein Genes25 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)22 (88.00%)
Associated Families25

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000369Metagenome / Metatranscriptome1222Y
F000376Metagenome / Metatranscriptome1216Y
F000441Metagenome / Metatranscriptome1136Y
F000447Metagenome / Metatranscriptome1128Y
F000671Metagenome / Metatranscriptome945Y
F000852Metagenome / Metatranscriptome860Y
F000980Metagenome / Metatranscriptome814Y
F001043Metagenome / Metatranscriptome794Y
F001106Metagenome / Metatranscriptome776Y
F001125Metagenome / Metatranscriptome769Y
F001460Metagenome / Metatranscriptome690Y
F001562Metagenome / Metatranscriptome670Y
F001781Metagenome / Metatranscriptome635Y
F003408Metagenome / Metatranscriptome488Y
F008245Metagenome / Metatranscriptome336N
F008814Metagenome / Metatranscriptome327Y
F011299Metagenome / Metatranscriptome292Y
F017134Metagenome / Metatranscriptome242Y
F020166Metagenome / Metatranscriptome225Y
F023344Metagenome / Metatranscriptome210Y
F029434Metagenome / Metatranscriptome188Y
F060917Metagenome / Metatranscriptome132Y
F066776Metagenome / Metatranscriptome126Y
F070122Metagenome123N
F103268Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_10000248100F020166AGGTGGMKETKIMKMDWRSLGYWPVYKDGKLTWEKDPENND
Ga0214921_10000248101F060917AGGAMIDWLVNRIFRWDTLRHAIFDEVHLYDHLDTIVNDPEGMKIGSSSWMEGDMWYGWTYNSNAKRYYFDDIGNKSLIGLWEDQWLREADAH
Ga0214921_1000024811F103268GGAGGMTNYNIDAMYEIRRHLWAELIDSGLLSEEDYYSDQINDNVIPIIPVQQAPEFNQFLSGKTHIVYDKIGLSYEENWMICCEKILFTVYSTDVSEINSIRNLMLDAFRRMDQSAKDVNASKSTPLLIFFNIMVAEISPTEPSQDLQGFMSTDVILEVKYARDVDSRGRFI
Ga0214921_10000248116F000852AGGAMTTKREYLKQQGITVGVRGRFSGAAKVALAEAATKGIVFTAEPVNKAK
Ga0214921_10000248117F000441AGGAMQMSDNYLNDQLNTAQKLLWGGSETENIEAHNIIAKLIKDRIEQTN
Ga0214921_10000248118F001781GGAGMKPSDKKKLNKCLDILGTTDLGLSMVWLWTWSTIKGFLEDNGGDWTMVATEDEMWDHLCEAVEAGMGFSLEYGAEQHYEDVQGWMLSRGYMKDPLDEEEEDENADE
Ga0214921_10000248122F001460GAGMMLGYTESDLNKMINAVHDAKLFYLRYPSDLIDKTELRNDLEMAVSFMQGLWAEGYFD
Ga0214921_10000248123F023344AGGMSDPHVTIRIYRKGGSIMEAFTDTVGEHILGAIQVDIEQHLFEQWNSKNLDEGSDYAEYMFMQFAPDNLKQSYNEYYGYIEGDEFLL
Ga0214921_10000248125F001125GGCGGMGDRANFGFRDSKGDTLYLYGHWAGAEMLHHLATAVAKAQPRWTDEAYATRICISQLVAQEWESETGWGLYINHIGDNEHKVPVIDWSKKTFTLYEEDLSKVVFSLPIDKFVDKYSRLVM
Ga0214921_10000248127F001043GAGGMSDYKDGFQDGYKFAREEIMEKLSEIDIADIDSWILDRLSEMIEGGNL
Ga0214921_10000248129F000980GGAMSVGSCIILFMTKYQKYTWVCTSDCDALIEYTFKDGYGWPAGVMDLTCRCGTACTLLSVEDATIPYTDTPLTKEEQMESTVTTTPIPDTYNSNLLVTYKVIHGYSDAEYATDKVASIEWDLHNGRQSQKRVTTLLSKIDSVKDIITEAYADSDDQDTLRAIAEALDISLTREVEWSATIEVSGTLTIDLLEDTVDDVEQEIYDNLYVDSQNGQIEIVDTEVTNVREN
Ga0214921_10000248139F017134GGAGMEQFTVACLNYEICGAQEIFYSDEDYEVYGDDYTCAECYASEEMEFYELTGWADSDALASAGHGMDEDY
Ga0214921_10000248140F011299AGGMMTRKDYVATAEILKFASDKAHPALFSKIVNDFAVMFAKDNERFDVNRFHEASGYNVPKFTSR
Ga0214921_10000248145F001562GAGGMKSQFEIDLEIKESFIDLLNDVYPTVKIGYSTFTPAEILECCDPVAFSIGLIEHEDYLAEMENE
Ga0214921_10000248146F029434AGGMKKYTFGVWLDIDAEDENQALSLFDSVVKNTFVSDSYCFEWKEVADEIAI
Ga0214921_10000248147F000447AGGAGGMGYVEIFRIDEEGAGWVDLSEATPKELLDLEIGLFQEGAL
Ga0214921_1000024815F003408N/AMPELIQTFKSMQKSESEKRKFLASIQGIDMGQEENENSTTFEDVQRRALGIEASADDVVSLQGSFASQAGFGIGAGLGYSKE
Ga0214921_1000024844F008245GAGGMAEDRNTLQLISDITEFNDLHEYMQDEHLDKALSIVVKLLMNPDVPSAKAPMLIMELQAMSTKFAVMSSVYSTIAKDKAGTINNNKKNVYYSVKESIDKLVDALKYVVRYNS
Ga0214921_1000024850F000369AGAAGMTNEIEPAVHFDRMNKVVEELLKGNSATQIATITGFSRKDVLEFIDEWKGVVHNDSNIRDRAREAISGADQHYAMLIKEAWKTVEDADTQGQLNVKAGALKLIADIETKRIAMLQSVGVLENTQIASQIAETERKQEVLVGILKEVTATCPKCKMEVAKRLSQITGIVESVIIEEADVV
Ga0214921_1000024852F000376AGGAMNEYQEMAKQCKCCTKHVPMPTTMKMYDGIIVCPTTLQNIIEYKKIWESYGQRPMGGIRKHFSEYVQQIVENSIDKNQDGSIQYN
Ga0214921_1000024869F066776GGAGVLNLTLDGVELFIKRSQTKNQESFWKNYDLIIWKKDNGGYTDITGMYRKDTWGKAEKISVNHEGVWKLPKKYVKYFK
Ga0214921_100002487F001106AGGAGMSFDTLKVAELKVIAEDFAVDTEGLKNKKDIIAALSEEGVSWSVYQKTKQEIEDNLEEIEIIPRLDPKKVDADSILVRMTRENYRYDIHGHTFTKEHPFVAMPEEEAQKIFDTEEGFRLATPKEVQDFYH
Ga0214921_1000024873F000671GAGGMSEKILCYCCNKTKNSLSAKKSTLLNINLLLCETCIDSKLEPRWVVILAGRQMGHEFVKEHVSKKRYPGDEILASELLI
Ga0214921_1000024879F008814N/AMDNQLTVLEEIIKQIGEELYQKWYNALAIEDRTEEASRAMSSNAGETAVWVIQTFMNKFNAAAEELKGQ
Ga0214921_100002489F070122N/AMSLATSLMPLQLDIYLQLDTQDKNSGAIKKEWSYYKTMQCSAKGIVSNSASARSGDKQTLNTKYSNEQVLEIRSVDQITYREKITNIRDIKGNVVWKELNFPSDSPTVFEIISSTPITDPFGNILAYNSIAKRSENQQIGI
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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