Scaffold Ga0214921_10000213

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10000213
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 115201
• Total Scaffold Genes: 186
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 119 (63.98%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Associated Families: 13

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F000808	Metagenome / Metatranscriptome	882	Y
F007691	Metagenome / Metatranscriptome	346	Y
F010766	Metagenome / Metatranscriptome	299	Y
F011487	Metagenome / Metatranscriptome	290	Y
F018929	Metagenome / Metatranscriptome	232	Y
F021757	Metagenome	217	Y
F024319	Metagenome / Metatranscriptome	206	Y
F034575	Metagenome / Metatranscriptome	174	N
F043941	Metagenome	155	Y
F057416	Metagenome / Metatranscriptome	136	Y
F063708	Metagenome	129	Y
F093845	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_10000213100	F043941	N/A	MPSYTVYNGKFVCHECKIEVRSLRLYAETKTATWMCKDKHLSTVKFGKQKRKNNDREE
Ga0214921_1000021312	F034575	GAGG	MDNMTLDPYLMKQVEMGMDGADILHGHLKTLMYEAEQQLDLCIEAEEYSEEAMDSMARTEASGYLDALSEVYALTYAIAFAKEDIKNRKEILGE
Ga0214921_1000021313	F063708	N/A	MDLNTFKEYINLHLISLEQDLEENPASIHVVDIEGQIYATKHLIEVLNG
Ga0214921_10000213134	F010766	AGGAGG	MRIKIIKFVVKVLGYEWGGENLKLPYWTVKGKKRNK
Ga0214921_1000021316	F007691	N/A	MTQTINTINDLINEIYESNFSHLEFEENMGGTDCDCHIHITLNTIAKYAGIEVG
Ga0214921_1000021323	F011487	AGGAG	MTYENDEMLDEYYATVCPSCKENAVDEYEEKCTHCLLEEMSVTYNEDIALEMSLGLDY
Ga0214921_1000021328	F000808	GAGG	MEYNYSLTISYDGELVSTTRSGDMLEMVSAWNKCVDFGDAKEYATYNLSDPMGKMYTKTFYRNGNVSVK
Ga0214921_1000021329	F000447	GGAG	MGYIEIFRIDNEGAGWVDLSEATPNELFTLEVGLLNEGALFTTKEAN
Ga0214921_100002133	F018929	N/A	MTNEEIAELLNKESYRIWDTARVIKNQDYHDGLVKGLKMASKFVAKL
Ga0214921_1000021331	F021757	AGGTGG	MMTRKDYVAVAEILSSFKDLIGDEFTYHDLVDEFGSMFEADNPNFKFETFRLACEK
Ga0214921_1000021336	F024319	AGG	MTNRIWESVNDYTNESDAKRLGYVSCSAGCGRVTAWSLCTMCGGNYTEHNLLGKVVK
Ga0214921_1000021339	F093845	AGGAG	MINVKLTTVSGNTRGMQFDTKEHVLEFIELYGATLPAGTAVNIDAPLIGIHSGWIQGKSR
Ga0214921_1000021393	F057416	AGTAG	MENYHHKTIKRFNLNGIIQDEARLGRLKNEYIRLIESEMRLSGYVPRLDIEPDFTIDYNERKKYFEFELTLYGVHIGRKKSEWIVGIDGARPIVTLQNRSKEFSQEQA