NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10000180

Scaffold Ga0214921_10000180


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10000180 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)124427
Total Scaffold Genes190 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (12.11%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013299Metagenome / Metatranscriptome272Y
F021986Metagenome / Metatranscriptome216Y
F076636Metagenome / Metatranscriptome118Y
F090385Metagenome / Metatranscriptome108Y
F093838Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_10000180103F076636N/AMTKKEIKSAINKAVYQYAESLGYQVSDDNDGSYVTFSKPDMEDAYDCIDYSRSNHDTCTVNWASDQIREDAELIDAFAEEQMKQYNK
Ga0214921_10000180123F090385GAGMSAQTDMKVISVLLDEAMEHGLEVEVIYEALKTMREDDAITPAQAMQVAMDEWVK
Ga0214921_10000180142F013299N/AMEKSKRIKQKDDKREWFIVMNSDLEYYCGMMYGGELVWSSDYKEAKPLDDEAKFRALKHLSHNKEIILDYI
Ga0214921_10000180151F021986N/AMACHYLYLKDQREFFVLMKNRDTDLIMKMVKCVLSATKRNKAKIDIFDISFKDMSSMLFTIDKAQYNDMLKNCLDDLIKIEEYELCAEIKKQLDKKTKTRKKKEVL
Ga0214921_10000180160F093838N/AMVKTKTMRRKIPVFKVYIEQGASYSQLTEIPEIIQAVRDEAISAIKDGIAKKKSSISLFEIAQSDYYIELGKDKWKPTLEKLIEYYSEREEYDKCIEARDLINKL
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