Scaffold Ga0214921_10000048

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10000048
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 225080
• Total Scaffold Genes: 352
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 239 (67.90%)
• Novel Protein Genes: 23
• Novel Protein Genes with Ribosome Binding Sites (RBS): 17 (73.91%)
• Associated Families: 23

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002869	Metagenome / Metatranscriptome	524	Y
F011584	Metagenome / Metatranscriptome	289	Y
F017480	Metagenome	240	Y
F017825	Metagenome / Metatranscriptome	238	Y
F019470	Metagenome / Metatranscriptome	229	Y
F022410	Metagenome / Metatranscriptome	214	Y
F027175	Metagenome / Metatranscriptome	195	N
F038992	Metagenome	164	Y
F044320	Metagenome / Metatranscriptome	154	N
F045091	Metagenome	153	N
F046897	Metagenome	150	Y
F047670	Metagenome	149	Y
F049483	Metagenome	146	N
F050978	Metagenome	144	Y
F051079	Metagenome	144	N
F056555	Metagenome / Metatranscriptome	137	Y
F066722	Metagenome	126	Y
F069829	Metagenome	123	Y
F072280	Metagenome	121	Y
F078376	Metagenome / Metatranscriptome	116	Y
F081041	Metagenome	114	Y
F094799	Metagenome	105	Y
F097315	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_10000048101	F051079	AGGA	MNDWDRNNLHFILDSDEATLEDFYSWATEDDLTYALSLVRQAKTELLIQEADILDEILTNATADDVSDAATMLKQFQL
Ga0214921_10000048111	F047670	AGGAG	MTIRNEYLWLVLIVAIIIVGPLLSIWALNTLFPVLAIPYTFETWLAVMLVGGMFRGSFVRKD
Ga0214921_1000004814	F027175	N/A	MTRDQKLERFAERELKRVYTELIIDDEQGGYVAFGRYHVKPQPAGFAVYYHSDDLVSTFSSKKTAMSWCVADHLQQHKLAQNIRILDNKKQTLTADIHCRRGQADRSTKPEFREMVRTKLAPKIENLTLLNQELEKCLNSAKYLQLRGFAK
Ga0214921_1000004816	F046897	GAG	MRIDEVENSNSLDPNKLMGLVNFLSGRADDENAQKQISTDAFISTAQSLGFPVNQRNVVSVVSQSPLDSVLEPIDPNNPGVIMYKGANTGATQMPVNKAQDIVAASAKQAAGKDRGV
Ga0214921_10000048162	F072280	GAG	MPTESLLYKVETDDRSSLYYNQYEWCITINISEASCLRYLETVRFEAAVRNAKYWAENDRWTDRAWSMTKETALRETRDLLLNETAPFKTVVSFNTVCIYTNNRRMADRLIDLDNDGVRVRLVRQAVLTRPANVVQLRESKYAYRTYFKERKYSREQRLMLANFLNSRKDTLHPCESLMSWLTGQFPGYVLNLNYSRAHYFVDHDHPNEGTMLSLVMPGIVRKTMPIETTK
Ga0214921_10000048163	F097315	N/A	MAKIQEEVVVIKLSKLIRDTDAGSEIATTDIVAALQSVAEELAGAGVVVEADKA
Ga0214921_10000048197	F078376	AGGAG	MPKKKSKIELYAEAPYIQGYNSAQAGEDFFNPYADVENAEADADDYHRGYDNAVEEIEVE
Ga0214921_10000048219	F045091	N/A	MLNKLVLTQELITRYPDAPPLDEAMATWWQNIRDDGGLRLTYEGFYVFENLLELSSYSFELPEKLLTPKNLIALDRRMTCPYYMVNNRKLNKLVMFGSKEAMMAVLHGNMQQFINSLGY
Ga0214921_10000048225	F022410	AGG	MKFTVDYNDKMHRWDVVRWDTTAEGAYAGTTVDRCTTLDEAEEICAYHTDMMNPDLWADVGCEFDRETA
Ga0214921_10000048240	F044320	AGGAG	MSKGTRPRPSVVSQQELAARHEAIFGRKPPRERYVPPPLPPELAGPSSFEQQLGTTKLPPGRT
Ga0214921_10000048260	F081041	N/A	MTIESAATFLVCVILLSCGIIVLAGLVLLINNLLHRYWKDLNWTLPESMQSVRYVEVDKTQEPHLDRK
Ga0214921_10000048263	F011584	N/A	MWEYVLTFFAVLFTDIFYTYYLKAVQDERVMAASVWATVVFLVACVAVINYTTNYWLLIPAGLGAFCGTWIGMRLRAQQKQ
Ga0214921_10000048293	F049483	AGGAG	MKITISVPKSAVKAVKEYAKEINGKAPSKEELAKFFAQDIQGLYGDTFDEGIEDAVECYF
Ga0214921_10000048312	F002869	GGAG	MTDEITLEMLDRKTAWCEQNAFWGQDSAIQRMQDFYFEKTRTSVNEAWPESFTLDDLAKVLNVERVSYRVYYSRDNLTLRLFVFRAHCTKYEEREMLALGFVHAKDGDTDNIPDQPVEEVKGEE
Ga0214921_10000048316	F038992	GAG	VNTIDQIINRIKRLEQFVVKVHVPEDFAFRGAVPFDMEIVGSTAMVTVWAVSEAEAQRRAEEYFQNNP
Ga0214921_10000048351	F017480	GGA	MSNTAPKQSTDTPQKTTPSRRPNETGSISVQAHMRIFDPKTQKTYVEGRA
Ga0214921_1000004851	F017825	AGGAG	MKNTAVALLFCLISSIAHAQQIVDMQKQIKCSDAQSVMSYFSINFQETPLWVGKTNTGTHITLLVNREKRSWTMIEYDASMACVLGAGETSSKPEI
Ga0214921_1000004857	F069829	AGGA	MSWFKRAPRRNEPQKPHVYHPPQNTPATERMLEEAKASGPDKKKKKVKSL
Ga0214921_1000004867	F019470	AGGAG	VEAFVTVADMIAALSALPPDAQLVVTESGYYSYGELSRLCLPEAYTMDGDEDDIPRGTVVYRIGHSHQSY
Ga0214921_1000004877	F056555	AGG	MNLKVKAAAIVAGILAFTIVAQGVIAVAAETYGGQAVVNTFVGGILLFLIYQMYTMVLATLERNKEIEKLAKKD
Ga0214921_1000004888	F066722	GGA	MEAGKTKTRFDMEQEIMQAWQVLDDIKMLSAREGTEKEDWDAVVRLYQIRFETLFETFEQLIKAGTIL
Ga0214921_1000004896	F094799	AGGA	LYSPEHTHGLTLHWARDDYMELWNMRMANIVELFGLPGDRYITEITQDYMTFWFRDHRDALLFRLCHGHSELRTA
Ga0214921_1000004897	F050978	N/A	MPCYFDYAMDTVNYVRLDCGSQQALAYKHQLDADGLVVNQDYVWRYQKPVYDEFAWTESEVSHVTFTFRNPALATFYQLKWSK