Scaffold Ga0214921_10000016

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10000016
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 349716
• Total Scaffold Genes: 484
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 328 (67.77%)
• Novel Protein Genes: 31
• Novel Protein Genes with Ribosome Binding Sites (RBS): 23 (74.19%)
• Associated Families: 31

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001443	Metagenome / Metatranscriptome	693	Y
F004053	Metagenome / Metatranscriptome	455	Y
F006053	Metagenome	382	Y
F008677	Metagenome	329	Y
F009512	Metagenome	316	Y
F011824	Metagenome	286	Y
F011825	Metagenome	286	Y
F012023	Metagenome / Metatranscriptome	284	Y
F012868	Metagenome / Metatranscriptome	276	Y
F019831	Metagenome / Metatranscriptome	227	Y
F021717	Metagenome	217	Y
F021920	Metagenome / Metatranscriptome	216	Y
F023521	Metagenome / Metatranscriptome	209	Y
F023584	Metagenome	209	Y
F029327	Metagenome	188	Y
F030333	Metagenome	185	Y
F033402	Metagenome / Metatranscriptome	177	Y
F034448	Metagenome	174	Y
F035180	Metagenome	172	Y
F037029	Metagenome	168	Y
F039621	Metagenome / Metatranscriptome	163	Y
F040990	Metagenome	160	Y
F048761	Metagenome	147	Y
F050111	Metagenome	145	Y
F059640	Metagenome / Metatranscriptome	133	Y
F086535	Metagenome	110	Y
F089853	Metagenome	108	Y
F098647	Metagenome	103	Y
F102519	Metagenome	101	N
F104453	Metagenome	100	N
F104705	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000001611	F006053	AGGAGG	MKVKKLILKLNRAEIEHNVDKAKKFWFRLLKKSLKHRHTESVK
Ga0214921_10000016121	F104705	AGGAG	MTKKHFIAMAKEISQMSDRKSARITAEAFCKVAQTTNPRFNQARFLEACGV
Ga0214921_1000001614	F059640	GAGG	MKGLYNYLGYEYCPWDDVEEDNIKTFHECYKNGQRIKMPYEFYNHSPYATMSYAEFVKHVQSIEVFVQG
Ga0214921_10000016141	F035180	GGA	MKNFQQYLAESERTYNYRIKIVGDVAPDFIKQLEERLKQFDVVKITKPRTTPVQLKPADFPKHSNDSVTSMDVEFRYPAIEPQIKEIAQLLFLDPNRIIMLTVPHEDGMDSERERVEAENKNLLTDTDYPAPDAEQKALIKDYSAPYNKHAVLKNAYRSDFTVAGGKTPPAKTTNDFPMDNTSPMTKIKRPPRPATGANPRG
Ga0214921_1000001615	F023521	AGGAG	MKDAIVFAGYSRQADGTMKFRTATSIARVRQLSAFGEEVFMIQISPVYNKSAAAKELLRLDHANGAKELEAFYVKQVRDENPFKVVKLKVPSVAMQQLVGAEIEEQPLTAKEAAKIRAEFNRKVKAAYEAN
Ga0214921_10000016153	F009512	N/A	MDELFQRLDRAERAIANVKNKVARKDLLKMVRAVDQAIVAADMESVECRRLHRETSRYRELVQKVKELLTNLEQHITFANLLG
Ga0214921_10000016197	F023584	AGG	MEKTAQQPAQNKPAAPKPKRPNETSAISVEGFVKIFDPNTKETFVEKRA
Ga0214921_1000001620	F098647	AGGAG	MFNFKSVVDQVATATKTPLTYVEDKAIRANLETLVDAYVDFTKTAYDTNLEISKQVIEAAKSIDYSKYFANAATAKSAK
Ga0214921_10000016249	F030333	N/A	MAIDRNPHLTIPVKTYTHYKECEPWCLANIGEWNIAWWKDFPDIAMAVIVEGPHEDCYWFANERDALMFRLKFL
Ga0214921_10000016250	F034448	GGA	MHTNNWTLPRPPEEVLSQCHQVLIGDPAFRMWQMKRYCREQNLSLVWSELVETTDVSVYFDEVSAFYFIDPADATLFRLRFK
Ga0214921_10000016251	F104453	N/A	MSKDEYYRNTAARLDTVIGGDTQNFARLQQAKKEWDQLAEAVPIGQGFLTFEDYMREYYGVKLTVNHKLGGIDLDYVVVDEKKYTVFLLKFGQ
Ga0214921_10000016253	F040990	AGGTGG	MDYYYEIDPKYEVTVFGDKWRYWCMANCSPADNGKMCFKTHDEFVARSSRVWLENRNGVYQVHPAWHGHRWVDPREFTLVKLKAKVIKWWDDE
Ga0214921_10000016254	F089853	AGG	MKIASIMPPNKTPYQGWQPCIDWCSQTCEGPWLFISEGVFEFELDSDYVLFMLRWG
Ga0214921_10000016271	F021920	AGGA	MAKQQTATELSRTLAGQWTKTEKRSEASRQITASRASAHAKIKAFKQTQILNK
Ga0214921_1000001630	F086535	N/A	MIQLKLWPPPEWHECVVSWDWLLEDDSPHVNEIYSWCNLHSSPSRYHVHGWHQTEGFAFRFEDPKDAILFKLKWTHQ
Ga0214921_10000016307	F012023	AGGA	MEKIDHTKLNERVIEQAYEAVLNKEQLQKLIQDKFERARVYHQALAKAPTFSVN
Ga0214921_10000016311	F011825	N/A	MIVKQQKKPVDQYYYSEKEWDRLGCGKLPTERDRMRQSHQDAHAKGNPKVDKNVVKGYN
Ga0214921_10000016344	F048761	AGG	MNNPQIMANQAIERAKNLQEFLVFRDMEEIIFNGNPIPYTMNHAMGGPVEITVPAISQEEAEQRVNEWLEGQRA
Ga0214921_10000016372	F021717	GAGG	MRLHEFVNLQEDGASTASTTSGSIATVSMPLGTTLSRNGGSFFSGAKYTTDDATPNTPAEYKKYKRKK
Ga0214921_10000016393	F102519	N/A	MKRIFLAAIALSLTSCAVWDAYMMAPYDANEYLQITEIRTTAIQYRRQCDNPVLAPANAQAIANRTELYEKYQEQIPRNTNGFKSAQALNEIAQGLNTAYVKGPVSSMFCRLKYNNIENGAEIIQRVTAGRPRK
Ga0214921_10000016413	F001443	N/A	MPMYETTVRTPEGEKKDRVWAKDLAEARMLLEQRHGPRNVPYIPHIIPS
Ga0214921_10000016439	F011824	GGA	MTAPASKNGDALYTVILRAPDAKNQLTKWSNTSRSIHARVEDNRMHIFNQNTLSLFMVTWTHGWDNMVIWDTWTKRHISL
Ga0214921_10000016447	F039621	GGA	MTKLIFVIALVGLLIVLVPIATIWSLNTLFPALAIPVTIDTWMAAVVLGSVVGGTTGVSFRK
Ga0214921_1000001650	F012868	GGAG	MRHYDYEWDLEPEYIKFDPELNIDKLGWHHGDYFKVTNVDGRAMLVKVSKLEKFLKDGEQ
Ga0214921_1000001674	F037029	GGA	MKTGSFRHWCNEKWFEHKDELESYGQPVRYPAKEYFSKYKFWLKREYRHQQKND
Ga0214921_1000001675	F050111	GAGG	MNFSYNPNNSKPLYSIRYTMKPDQIFTFVSGLHDIQLDMIDEAVARKEKEGFPEASVVIKHIMEKK
Ga0214921_1000001676	F029327	AGGAG	MGFFKDIEIEIMDWQDQGRSIQDTYIYFKDYVTLEDVVRIFARDCDEATA
Ga0214921_1000001677	F033402	GGAG	MSEIKLDGLNQRQRVLADIMWSIEEWNDVERFIATLPKRERIECEGIVEMMRMELVEQYRKGMDIETTVEADKLIDKIRRL
Ga0214921_1000001681	F019831	AGAAG	VSLQRKSQLKQTQKPLLQRSNFGLDDSDLILDDEVTYGRNRRAEAFGKVIEDDLSDYVKFRLWLARQLALKKYQETWG
Ga0214921_1000001687	F008677	AGG	MIVEKDKVYTFKLTNADELVGKIIEITNDGYIVSQPLSAVPTEKGIQLIFTVFTGNPKEDVTINKTAIAMICQTRDEVCDHYLEATTGIKAVRKPSIIMG
Ga0214921_1000001698	F004053	N/A	MLIREVADPNTQRLAALSQFLLGRSEDESAKKQISQQAFIDAAKSLGVNVTPENLGDLISQEPLSNILEPLEPNTGVVRFKGNTEAETGMSVDQARAVVDSNAKAALKRRQ