Scaffold Ga0233411_10000083

Overview

Basic Information

• Taxon OID: 3300023112
• Scaffold ID: Ga0233411_10000083
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_2_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 32577
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (14.55%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (30.77%)
• Associated Families: 13

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 48.6569
  • Long. (^o): -123.4875
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018478	Metagenome	235	Y
F025412	Metagenome	202	Y
F027524	Metagenome	194	N
F028650	Metagenome	191	N
F036312	Metagenome	170	Y
F049288	Metagenome	147	Y
F059442	Metagenome	134	Y
F076108	Metagenome	118	N
F079336	Metagenome	116	Y
F099320	Metagenome	103	N
F100003	Metagenome	103	N
F103288	Metagenome	101	Y
F105502	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0233411_1000008311	F100003	N/A	MKIKRKHYKALQYASLIQRWKYLPSNFIFQVVQNSKVDETMLNRNRIEQNDKRI
Ga0233411_1000008312	F018478	GAG	MIKEFEEMDWSKEYTYKEKKIYISYETKKYILCSFYESGKGTFKLDKTEFHG
Ga0233411_1000008319	F028650	N/A	MRIPKSLKEVLVKDYIQINKIRSAEYDNPFTRTIDLLCIFNDRKDVLKCKPAELAVDLSHLLEEPSRVLKQYFTINGKRYGIVNHVNDLEAGQYMSFTTYLKGFADNPNVHIDQMPDILASVIFPVDKNNKVMAIEPSYFRNLAEDIRNTMSIEDAYPIAVFFCNLSRSLTKCTQDYLNTKLEKMTEESRNAILEVAKDLESDGVGLPHSITSAMEILQKDPTTRK
Ga0233411_1000008321	F049288	GGA	MSEGLVTPHSTITEVLKAFGLEMQKDLRAELVKDHAYVSGDLAEQIEFTTVVEGTAFVSSLRLKDYYDYVNKGVNGTRSVKNNTPYSYMQSSKIPFYFAKQWMNAKGLFVDKGTTLTSLAGNKYKAGSKDSQAFAMARSWKEKGTEGNHFYDKVVTQARLDKLSKDLASAAAGDLKIALTDTFKRLK
Ga0233411_1000008333	F105502	N/A	MLSSYQRLKFKKDLAVKVAEELKEDIEFVILYPHTARAKNIRREVKEKNNG
Ga0233411_1000008344	F076108	N/A	MIRIELSDNEIEYSTYFPIDDPHDIMYSFEEMVRMYTKADLEVDSYILQRAKEIKLKNSN
Ga0233411_1000008346	F036312	N/A	MKQKLTHSLYEAKKVQKDLYEVCTTNYWNNGTYTVKDISHHSTEREAQEQKEINKHKNQI
Ga0233411_1000008348	F079336	N/A	METILRSELETADKRIIVLESTIDTYKRILDAQDERIELMEKSHKFELENYYTKNTEL
Ga0233411_100000835	F027524	N/A	VNEDFIKEKRQVIETACKNICKHSDIWRDLSQEVNIYFLTNALPENLNKIDGFIFVVAYKMFHLSGSEFNRLHFDNVLKESTELDYLKADDIPYISNNVYKEYLEQVKQLDEMERIWVEEIVKRNLSIKLFSDHTGIHRTTAKERMNSIYEKLRKNNK
Ga0233411_1000008350	F059442	N/A	MRKEDRYKPYIYKTRNKQGKLEEYSRYYKTKREAVYWYKTQGKWLEKHLNRKLILIDTDINLFTYVPRALLNR
Ga0233411_100000836	F103288	N/A	MSIIIISIISILGWTDIFKQTFTTTEGFNYKYKAISKILYAIDYKPLNCAYCLSFWVGLIFSIGLLDISYMVIFLYFARTRE
Ga0233411_100000837	F025412	GAG	MDYRKLKWGALKSYGTKLGIDTKGMTKDVLLEWLDAMPDVAHGIEELKPFTGIKQHHPLFDEIKDYIPYLKAFKKLKAVSPVPEVNKAIATLFLKYIEEQKNIRINLGCGRCKHSYYERMIAGYNRLVDEYGGERI
Ga0233411_100000838	F099320	AGTAG	MEENVYSYCLEVHEDGNLYMVTEYMNGYITIWAANATIETEGEVYFINLYE