Basic Information | |
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Taxon OID | 3300023109 Open in IMG/M |
Scaffold ID | Ga0233432_10003217 Open in IMG/M |
Source Dataset Name | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_10_MG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Restricted |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
Scaffold Components | |
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Scaffold Length (bps) | 14853 |
Total Scaffold Genes | 33 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 28 (84.85%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | Canada: British Columbia | |||||||
Coordinates | Lat. (o) | 48.5847 | Long. (o) | -123.5008 | Alt. (m) | Depth (m) | 10 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F021268 | Metagenome / Metatranscriptome | 219 | N |
F097370 | Metagenome / Metatranscriptome | 104 | Y |
F100469 | Metagenome / Metatranscriptome | 102 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0233432_100032171 | F021268 | GAG | MSYLIHQFHLSNEASDHLNSVGWSGDFGDFPEIVIQRDVKFMGGSKNFESWMSDHYASVARVTGVDTLEDVFHVGNGYGPEGSCIQKFTRMHSVSVGDVIVNEKCGTAWMCDSEGWSNIDFGRSF |
Ga0233432_1000321711 | F097370 | AGGAGG | MIDLTGLEATEICEILHEKCKFHDWTYMMSDDSRTYHAGLAEADEMEYIRSVLDAMGFQLTAKCIIEGWKPNSLKKEGYLV |
Ga0233432_1000321713 | F100469 | GGAG | MSELTINPKAYFNGSYVNFERDGKRTTGFVSEVFDEGFAVDMVVGNDTRFPHHNTDYTVFVKTENASH |
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