Scaffold Ga0233335_1006889

Overview

Basic Information

• Taxon OID: 3300023063
• Scaffold ID: Ga0233335_1006889
• Source Dataset Name: Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-222
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2513
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Leotiomycetes → Helotiales → Rutstroemiaceae → Rutstroemia → unclassified Rutstroemia → Rutstroemia sp. NJR-2017a WRK4 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Leaf Litter → Soil And Plant Litter Microbial Communities From Temperate Forests In California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 40.2526
  • Long. (^o): -123.026
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F106076	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0233335_10068893	F106076	N/A	MVNEETVYSTPWKPVKTIAKKTVASIPFKAPLLFPCIKEWCAYVTVTPDDSNITVLSRGNSKGFTATIPIGGHCPPSSMVGDKALXKYAQNIAKKNRASETINRATPMFNPCCTAKVWLPKYVPSLITSRHQKDIDRTRDKKAVIKNXDELPKPCIVKTALVVKANNDIQQYNGQGDGDTKXNGXDXKLLLIKFVIIKILLMDSLVXLYL