Scaffold Ga0233357_1000611

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0233357_1000611

Scaffold Ga0233357_1000611

Overview

Basic Information
Taxon OID	3300023056 Open in IMG/M
Scaffold ID	Ga0233357_1000611 Open in IMG/M
Source Dataset Name	Soil microbial communities from Shasta-Trinity National Forest, California, United States - GEON-SFM-MS2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2177
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil And Plant Litter Microbial Communities From Temperate Forests In California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	40.3809	Long. (^o)	-123.4135	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F052795	Metagenome	142	Y
F101733	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0233357_10006113	F052795	AGGAGG	MTLEIVWRNPIPPAKGEKRVEPVAVDECGAVYAVHTADKTAAFELILGGAA
Ga0233357_10006114	F101733	N/A	MRGAFVVRLGAETEPSENRFEGWVEEVDSGKELRFHSTGELIQFLGERFRAAFQSRDRELDQRRTSGSSEEEKS

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