Scaffold Ga0233356_1000018

Overview

Basic Information

• Taxon OID: 3300023046
• Scaffold ID: Ga0233356_1000018
• Source Dataset Name: Soil microbial communities from Shasta-Trinity National Forest, California, United States - GEON-SFM-MS
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 86107
• Total Scaffold Genes: 83
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (50.60%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil And Plant Litter Microbial Communities From Temperate Forests In California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 40.282
  • Long. (^o): -123.2869
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004033	Metagenome / Metatranscriptome	456	Y
F004159	Metagenome / Metatranscriptome	450	Y
F014455	Metagenome / Metatranscriptome	263	Y
F016574	Metagenome / Metatranscriptome	246	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0233356_100001816	F004033	AGG	MKKLAVAIALMLSAIVANAADRATTPEITPPANGEEFLRLSSTEKLFWSIGYSQGYLDALNKIDVAAGANSACASLAARTERQSSTAGKMSGFELVSGLEKFYADPANTLIPVGSAIRIYMLQAAGKDQTTIQELIETARALGAESSHRPLASK
Ga0233356_100001830	F014455	AGGAGG	MLHFLKKLLMFRVGQKTTRGVARSIGFGKIATIAGLIGGYKYMRKHA
Ga0233356_100001844	F016574	GAGG	MLETDVIDRIRHIFLHPRPHVSISQATALLGWTRRQMSEAIEAGEVELWTTPVGKWFPRAEMMAKALEIWPLHVIEEALGAAADGVLPQAVRTAELRVRLPRHHIDMLEYRADQQETTVSGVLARELDGIASAHIEELSSALPGFAEAMAWPG
Ga0233356_10000186	F004159	AGGAG	MATTRDDDHERAAAGMDYDFPIREKATQLGNALADSGPDALFEEIEKLLPESWREHIRTFPIAAVVLGVGVGVWLGMRKGDEVIAAGTAMITSAAMQNVANVMQHATGGGDGE