Scaffold Ga0233427_10000299

Overview

Basic Information

• Taxon OID: 3300022933
• Scaffold ID: Ga0233427_10000299
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_118_April2016_100_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 64573
• Total Scaffold Genes: 116
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 70 (60.34%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 48.5847
  • Long. (^o): -123.5008
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001235	Metagenome / Metatranscriptome	741	Y
F007003	Metagenome / Metatranscriptome	360	Y
F016619	Metagenome / Metatranscriptome	246	Y
F040325	Metagenome / Metatranscriptome	162	Y
F042629	Metagenome	158	Y
F045428	Metagenome / Metatranscriptome	153	Y
F047713	Metagenome	149	N
F056888	Metagenome / Metatranscriptome	137	N
F079216	Metagenome / Metatranscriptome	116	Y
F087902	Metagenome	110	N
F092887	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0233427_100002991	F045428	N/A	MTKQIIALVALLSLGAFSAVYAETATVEVPFDSHGQSCHFDQFAVEFHCVWQGVGEKFTYEDLEEFKDLLDETIYDEELRKLNEHALAEIAAEKAKLTPNELVILEIENKLNRGIATATDSVYMNLLKELDTCQQGMDKQTAPFQNAREFEISEFTMWKVNNVKYDGKLGEIVMAIEECRAQHALKKVVGEGYSNMPTGDDDVQFSLLVEYEGIQALNFDDHTATHRNIDESLICGNSQFPLTHQAQFGCEVLYDGKTLEQIKLENELKFGTDGMIGSHNKVLDDYFDFLKSSNFRYATVEDKLYEQSIAEPIIKNMIESNNFVQNQLKNE
Ga0233427_10000299108	F001235	N/A	LPTELNTNENANDMTKKLWEKHQGDEFTAVNNYKEGVCLGCMKVDVAAATIADICGDCAGKKGREPLLAKICDKYYGLCFFCNKYKFNIEQINGRFCSTCHRRIANITKEYNKKGGFMKTDPFWVSMRKKHGKDWKQIMGGYRKSNRK
Ga0233427_100002993	F016619	N/A	MAITIAHNADHKSLTGKTLSIQSELTSKLKSTIVDVTYGASDNYATNGNTVDLSLGGRISTVIGAEILHCDKGLLLQYAPAAAGAAATGKIKAYGHTPTSSTATVVALEELDASDTAVNSMTIRIRVIGF
Ga0233427_1000029936	F040325	N/A	MARRKIGNSHTTICVSWEDKELFRKFAKFVKTTRTGKLYESDAVLFNKMLLFFKESNPVGEVSNTTYPTKNQEPTQLR
Ga0233427_1000029937	F007003	N/A	MIHFFTKNIDEKKYRDIIQRIIMINGNDGTNLSGYNAWKNFEENWELNIIPVTDQEDFKSYYKHLNVETSDGIAWGVTGVRVIYMFVNDVKNPFIIRQNIMPLGHELLHAIYQEAVGTFHITRIYNAPEGRANTRGAAATVIVHDNWYGSKDTIKVWIRWGLIWLPITIPFIPVKKAKETYPI
Ga0233427_1000029939	F056888	N/A	MNVSEVLDIDGSVERSKKLVAGDKITIQGFKIKNVDEVGAEVAEISTTEGLRHSFGKTVIGQAKSDYWKDVVAKCVDKDAADGLDAYVVEREAEKTGRMMLCLSMFPPKN
Ga0233427_100002994	F087902	N/A	MTYTNHNVKDVSADGAVKAGHGVIVSVHVVKAGASGDKIVFHNGDANSDPAEFTVYGEGIQNIQDIMRRFEDGIFAEVTGTTARYLVVFK
Ga0233427_1000029944	F092887	AGGA	MVISKPIRRNKKTSKSVVVIQLPRRISTHDRIINVLKDYKNGLPLNEIHYKSQIPSLGNLHHTVKFMVRAGEIKQYTCDKCCSTELYKLI
Ga0233427_1000029951	F047713	GAGG	MEIIGQGEVAALEIIKDMFGNSCEYLTQVKLSDMVTPEYLETFSDRQLKETIDIVVDTGFQYLAIRVQDKHHVSARMATIDNIQKKMLEWNGWKVIDIWHYECKELWKDKVNEKSRLELENAIKESSID
Ga0233427_1000029953	F079216	GGA	MTVCDKCGHGMLLHGCVGNKGYCSEGNGNWCECTEKGKTYEEEISDLQHERIMS
Ga0233427_100002997	F042629	N/A	MTIITYDAVDDIISLIKTKWSNLRPPTISKVWDKRTVGFIDDRSDQVILSPKGEEIQYFGLGGSAFWHNQIVEMEIRTYQDIKRHNSVVKEIVKIIKDNITGTNYTDLRVIGSFSKNFAYRNMYSYVVTISYRKSDPS