Basic Information | |
---|---|
Taxon OID | 3300022931 Open in IMG/M |
Scaffold ID | Ga0233433_10001521 Open in IMG/M |
Source Dataset Name | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_100_MG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Restricted |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
Scaffold Components | |
---|---|
Scaffold Length (bps) | 21896 |
Total Scaffold Genes | 32 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (43.75%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (28.57%) |
Associated Families | 7 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Canada: British Columbia | |||||||
Coordinates | Lat. (o) | 48.5847 | Long. (o) | -123.5008 | Alt. (m) | Depth (m) | 100 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F007003 | Metagenome / Metatranscriptome | 360 | Y |
F040325 | Metagenome / Metatranscriptome | 162 | Y |
F045428 | Metagenome / Metatranscriptome | 153 | Y |
F047713 | Metagenome | 149 | N |
F056888 | Metagenome / Metatranscriptome | 137 | N |
F079216 | Metagenome / Metatranscriptome | 116 | Y |
F092887 | Metagenome | 107 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0233433_1000152112 | F092887 | AGGAGG | VVISKPIRKNKRNLTSIVDIERSRRVSTHDRIINVLKEYKKGLPLTEIQYEGKISSMGNLHHTIKFMVRAGEVNKEKCSHCNSTELYKLNI |
Ga0233433_1000152116 | F056888 | N/A | MNVSEVLDIKGSHENSKKLVAGDKITIQGFKIKNVDEVGAEVVEISTTEGLRHSFGKTVIGQAKSDYWKDVVEKCVDKDAADGLDAYVVEREAEKTGRMMLCLSMFPPKN |
Ga0233433_1000152118 | F007003 | N/A | MLLIIWLIMIHYFTKNIDEKKYNDIIQRIIMINGHDGTSNSGYKAWKNFEDNWELNIIPVTDQEDFKVYYKHLNIETSDGIAWGVTGVKVIYMFVNDVKNPFIIRQNVMPLGHELLHAIYQDAVGTSHITRIYDSPEGRANTRAAAATVIVHDNWYGSKKTIKIWIRWGMIWLPITIPFIPVKKAKETYPI |
Ga0233433_1000152119 | F040325 | N/A | MARRKIGNSHTTICVTWEDKELFRKFAKFVKKTRTGDLYESDAVLFAKMLNHFNGNNEAGNKSNTTYPTRT |
Ga0233433_100015212 | F079216 | N/A | MTVCKKCGHGMILHGCVDGVGYCSEGNGDWCNCTEKGKTYEEEIAELK |
Ga0233433_100015213 | F045428 | N/A | MKNSILLAVLVSVALTSGVSVYAETATVEVPFNSHGQTCNFDEIAVEFHCVWQGFKEVYTIEDLKEYKELLTAERYDQEIQKLNEQALAEIAIEQAKLTPNEKTIQKIEEKLAKGIATATDSVYMNLLKELNTCKQGMDRQTAPFQEAREFEISEFNLWQVNNVPVEGHLGQLVMAVEECRAQIALKKVVGEGYSNMPTGDDDVQFSLLVEYEGQRALNFEDHTATHRNIDRSLICGNNQFPLTHQAQFGCEVLYDGKTVEQIEAENNARFGTDGVIHYESELLTEFHAFMESYGNKIATVEDKVNAEKLAEPIAKEMIENNNFVQHQLRNDLQ |
Ga0233433_100015216 | F047713 | AGGAG | MEIIGQGEVATLEIIKDMFGKSSEYLTQVKLSTMVTEEYLETFSERQLKETIDIVVITPFDYLAIRVQDKHHSSARMATIDNIQKLMLEWNGWVVVDVWHYECKELWKDKVNKRSRLELEMAIKESSIE |
⦗Top⦘ |