NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0233426_10001164

Scaffold Ga0233426_10001164


Overview

Basic Information
Taxon OID3300022920 Open in IMG/M
Scaffold IDGa0233426_10001164 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_118_April2016_10_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)24952
Total Scaffold Genes47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (4.26%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (12.50%)
Associated Families8

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameCanada: British Columbia
CoordinatesLat. (o)48.5847Long. (o)-123.5008Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001913Metagenome / Metatranscriptome618Y
F006002Metagenome / Metatranscriptome384Y
F013571Metagenome / Metatranscriptome270Y
F014383Metagenome / Metatranscriptome263Y
F047678Metagenome / Metatranscriptome149N
F063092Metagenome / Metatranscriptome130Y
F085360Metagenome111N
F100687Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0233426_100011641F014383N/AMANEIYDSTWFGNTIDTASSIGTSTEMIQGQINMEDRQEVEAVKCLADTIHRIGLQDIQN
Ga0233426_1000116412F001913N/AMIKEILDLLKDTKSNSYVVQLAKGKNKFPDSFREVFKRQKQDIEWKK
Ga0233426_1000116421F063092N/AMVEDRLIWNGVKQRITSKMSNEDFKTMCRLHAKHFNHKYHQPCTCNKKRLRQWIEQLNDKLI
Ga0233426_1000116426F047678N/AMTNKQIEQVSGAIITSFVNLHFLEEAKASGLFRHQTKNHVNRVIKDLIEIETNYFAKVEEVDEKDLGDKLVANKLEFVKWILTKFDFNDFTKIQEVCIAYSQDKEQLIKTSDKILTENGAETIE
Ga0233426_1000116428F100687N/AMDTKLKNIIKIIQPEFESEDSWYNEQLPNEVTLYLDTDEHLIDLHLKDDVLHTNIWIGEEEYQLTEEDANFIYKHLNNLLDNEIELTKRYYNEEKYEQNRY
Ga0233426_1000116433F085360GGAMAKIKKKLKPFKNCDHKAQSYCFNKGFVITLEPSGANYKVKYQRGHSGQYYMKGKEFDLQEAYQSIWDLYTKIYNYDKQKENESTTNS
Ga0233426_1000116447F013571N/AKSTLVMEINLILLVPDAMMVGWQYYRPDDNFNYSEVNLYLFFGQIQLKWTSNE
Ga0233426_100011649F006002N/AMRAVYCKCKNTYSIECKQNQGKDCNAPDYWKQGIGRINAIEEEN

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