Basic Information | |
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Taxon OID | 3300022920 Open in IMG/M |
Scaffold ID | Ga0233426_10001164 Open in IMG/M |
Source Dataset Name | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_118_April2016_10_MG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Restricted |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
Scaffold Components | |
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Scaffold Length (bps) | 24952 |
Total Scaffold Genes | 47 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (4.26%) |
Novel Protein Genes | 8 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (12.50%) |
Associated Families | 8 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | Canada: British Columbia | |||||||
Coordinates | Lat. (o) | 48.5847 | Long. (o) | -123.5008 | Alt. (m) | Depth (m) | 10 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F001913 | Metagenome / Metatranscriptome | 618 | Y |
F006002 | Metagenome / Metatranscriptome | 384 | Y |
F013571 | Metagenome / Metatranscriptome | 270 | Y |
F014383 | Metagenome / Metatranscriptome | 263 | Y |
F047678 | Metagenome / Metatranscriptome | 149 | N |
F063092 | Metagenome / Metatranscriptome | 130 | Y |
F085360 | Metagenome | 111 | N |
F100687 | Metagenome | 102 | N |
Protein ID | Family | RBS | Sequence |
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Ga0233426_100011641 | F014383 | N/A | MANEIYDSTWFGNTIDTASSIGTSTEMIQGQINMEDRQEVEAVKCLADTIHRIGLQDIQN |
Ga0233426_1000116412 | F001913 | N/A | MIKEILDLLKDTKSNSYVVQLAKGKNKFPDSFREVFKRQKQDIEWKK |
Ga0233426_1000116421 | F063092 | N/A | MVEDRLIWNGVKQRITSKMSNEDFKTMCRLHAKHFNHKYHQPCTCNKKRLRQWIEQLNDKLI |
Ga0233426_1000116426 | F047678 | N/A | MTNKQIEQVSGAIITSFVNLHFLEEAKASGLFRHQTKNHVNRVIKDLIEIETNYFAKVEEVDEKDLGDKLVANKLEFVKWILTKFDFNDFTKIQEVCIAYSQDKEQLIKTSDKILTENGAETIE |
Ga0233426_1000116428 | F100687 | N/A | MDTKLKNIIKIIQPEFESEDSWYNEQLPNEVTLYLDTDEHLIDLHLKDDVLHTNIWIGEEEYQLTEEDANFIYKHLNNLLDNEIELTKRYYNEEKYEQNRY |
Ga0233426_1000116433 | F085360 | GGA | MAKIKKKLKPFKNCDHKAQSYCFNKGFVITLEPSGANYKVKYQRGHSGQYYMKGKEFDLQEAYQSIWDLYTKIYNYDKQKENESTTNS |
Ga0233426_1000116447 | F013571 | N/A | KSTLVMEINLILLVPDAMMVGWQYYRPDDNFNYSEVNLYLFFGQIQLKWTSNE |
Ga0233426_100011649 | F006002 | N/A | MRAVYCKCKNTYSIECKQNQGKDCNAPDYWKQGIGRINAIEEEN |
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