Scaffold Ga0247768_1000046

Overview

Basic Information

• Taxon OID: 3300022910
• Scaffold ID: Ga0247768_1000046
• Source Dataset Name: Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L016-104C-6
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 57934
• Total Scaffold Genes: 71
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 53 (74.65%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.3
  • Long. (^o): -89.38
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016854	Metagenome / Metatranscriptome	244	Y
F031439	Metagenome / Metatranscriptome	182	Y
F081191	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247768_100004613	F031439	AGG	MYLIPIALIILLALIAVAWSPIFALIIFVIGFVAFLAWAASNKRADEKLAPPEQPGRQPHNENDTPTGIWGERRPS
Ga0247768_100004641	F016854	GGAG	MAAPNTKTVPKPGEVWLSCPPYLMMARIVEVNTEAEPPVVSYELHDDDGSLLQAVEHATLDRGWWRTFQRLEPRFG
Ga0247768_100004648	F081191	GAGG	VTQRKIRLPVPEEVVAAIVELADDGFCRRGELVQRFPRLGERDLRRAVRRAVSQGLVLERRGPDGAWHVAVSSEGWNLHRSG