Scaffold Ga0247766_1032641

Overview

Basic Information

• Taxon OID: 3300022906
• Scaffold ID: Ga0247766_1032641
• Source Dataset Name: Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L223-509R-6
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1289
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.3
  • Long. (^o): -89.38
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008586	Metagenome / Metatranscriptome	331	Y
F091762	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247766_10326411	F091762	N/A	MRSNYGSNKEGKRKRRIKIVLVSILVFVLAIIGFGFLYWNTNKDKIIKTELEKAIVKSNKGFYKISYDNMKIDETSGYLSARNMKVRFDSARYQSSVLENKVPSMVFNIDIPEINVIGVRTTRALLDKEIVGRKLEIKNPIIDLQYTYKGKDAIRNVPTQEIYRQILGDMDMIQIDSVLITGAQIRTSNRNTGKLIIDVKDVDFSLNDVKVDSAAYMDRSRFLF
Ga0247766_10326412	F008586	AGGA	LVQLFQIAQKSIIMNKLLLPLKLSNVTENMISIHDYLKNSYNEKKEWLAESIAFFKDFTQMEEEFRQELLNKNEYCICLEGEMVTEKDILTRSMEENY