Scaffold Ga0247778_1000774

Overview

Basic Information

• Taxon OID: 3300022894
• Scaffold ID: Ga0247778_1000774
• Source Dataset Name: Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L049-202B-5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25855
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (67.65%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.3
  • Long. (^o): -89.38
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056692	Metagenome / Metatranscriptome	137	Y
F060081	Metagenome / Metatranscriptome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247778_100077424	F060081	N/A	VPQVLNFRDKLGEPLLFQHWDDHTQRAIWIASDGNQVRCITVAGLTVHEMADMWLSFNQRISRAHFNLSPQLVREIIEAEIDVSVALVN
Ga0247778_100077425	F056692	AGGAG	MNLTKNAPAVNSDRYVPPGDELLSDYRERRSLEERDRVERKRVDAAAQHSVENSADLRIRAWEKVHQLRMPSDPGHPALGAIAEATRLTLADVQNEQRLRAARRASAEV