Metagenome / Metatranscriptome Family F056692

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F056692
Family Type	Metagenome / Metatranscriptome
Number of Sequences	137
Average Sequence Length	105 residues
Representative Sequence	MSSMTSLRPANMERSAGDEILSDYRQRRALEESERAERKRVDSAEQYSELNSADLRIRAWEKVHQLRMPSDPLHPALAAIATATQLTLEDVQNEQRLRIARRASGGV
Number of Associated Samples	96
Number of Associated Scaffolds	137

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	83.09 %
% of genes near scaffold ends (potentially truncated)	35.77 %
% of genes from short scaffolds (< 2000 bps)	76.64 %
Associated GOLD sequencing projects	78
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.53

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (84.672 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere (15.329 % of family members)
Environment Ontology (ENVO)	Unclassified (62.044 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (68.613 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 57.78% β-sheet: 0.00% Coil/Unstructured: 42.22%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.53
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.53
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 137 Family Scaffolds
PF00076	RRM_1	45.99
PF00072	Response_reg	5.11
PF00144	Beta-lactamase	4.38
PF13893	RRM_5	2.19
PF13437	HlyD_3	2.19
PF07715	Plug	1.46
PF13460	NAD_binding_10	1.46
PF08240	ADH_N	0.73
PF00691	OmpA	0.73
PF02452	PemK_toxin	0.73
PF08534	Redoxin	0.73
PF01479	S4	0.73
PF12700	HlyD_2	0.73
PF04970	LRAT	0.73
PF07992	Pyr_redox_2	0.73
PF07362	CcdA	0.73
PF07786	HGSNAT_cat	0.73
PF00440	TetR_N	0.73
PF00903	Glyoxalase	0.73
PF04343	DUF488	0.73
PF12802	MarR_2	0.73

COG ID	Name	Functional Category	% Frequency in 137 Family Scaffolds
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	4.38
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	4.38
COG2367	Beta-lactamase class A	Defense mechanisms [V]	4.38
COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	Defense mechanisms [V]	0.73
COG3189	Uncharacterized conserved protein YeaO, DUF488 family	Function unknown [S]	0.73
COG3503	Uncharacterized membrane protein, DUF1624 family	Function unknown [S]	0.73
COG5302	Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid	Mobilome: prophages, transposons [X]	0.73

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	84.67 %
Unclassified	root	N/A	15.33 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	84.67 %
Unclassified	root	N/A	15.33 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	84.67 %
Unclassified	root	N/A	15.33 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	47.45 %
Unclassified	root	N/A	15.33 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.73 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	26.28 %
Unclassified	root	N/A	15.33 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.19 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.73 %
unclassified Proteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria	0.73 %

Name	Rank	Taxonomy	Distribution
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	20.44 %
Unclassified	root	N/A	15.33 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.19 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.73 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.73 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.73 %
Cellvibrionales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales	0.73 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	20.44 %
Unclassified	root	N/A	15.33 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.19 %
Cellvibrionaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Cellvibrionaceae	0.73 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.73 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.73 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.73 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	20.44 %
Unclassified	root	N/A	15.33 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.19 %
Cellvibrio	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Cellvibrionaceae → Cellvibrio	0.73 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.73 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.73 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.73 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	20.44 %
Unclassified	root	N/A	15.33 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.19 %
unclassified Cellvibrio	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Cellvibrionaceae → Cellvibrio → unclassified Cellvibrio	0.73 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.73 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.73 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.73 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	20.44 %
Unclassified	root	N/A	15.33 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.19 %
Cellvibrio sp. BR	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Cellvibrionaceae → Cellvibrio → unclassified Cellvibrio → Cellvibrio sp. BR	0.73 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.73 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.73 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.73 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2140918013\|NODE_2420_length_1236_cov_7.409385	All Organisms → cellular organisms → Bacteria	1268	Open in IMG/M
2228664021\|ICCgaii200_c0269684	Not Available	552	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101468771	Not Available	1563	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101469944	Not Available	1055	Open in IMG/M
3300000956\|JGI10216J12902_117863780	All Organisms → cellular organisms → Bacteria	582	Open in IMG/M
3300002070\|JGI24750J21931_1091819	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	515	Open in IMG/M
3300002568\|C688J35102_120054891	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	861	Open in IMG/M
3300004081\|Ga0063454_100239819	All Organisms → cellular organisms → Bacteria → Proteobacteria	1074	Open in IMG/M
3300005260\|Ga0074072_1000017	All Organisms → cellular organisms → Bacteria → Proteobacteria	97885	Open in IMG/M
3300005260\|Ga0074072_1001363	All Organisms → cellular organisms → Bacteria	14825	Open in IMG/M
3300005334\|Ga0068869_100447587	All Organisms → cellular organisms → Bacteria	1070	Open in IMG/M
3300005335\|Ga0070666_10084308	All Organisms → cellular organisms → Bacteria	2175	Open in IMG/M
3300005335\|Ga0070666_10496089	All Organisms → cellular organisms → Bacteria	885	Open in IMG/M
3300005335\|Ga0070666_11068154	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	600	Open in IMG/M
3300005340\|Ga0070689_101049880	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	727	Open in IMG/M
3300005347\|Ga0070668_100551799	All Organisms → cellular organisms → Bacteria	1003	Open in IMG/M
3300005367\|Ga0070667_100003636	All Organisms → cellular organisms → Bacteria → Proteobacteria	13125	Open in IMG/M
3300005367\|Ga0070667_100563061	All Organisms → cellular organisms → Bacteria	1048	Open in IMG/M
3300005367\|Ga0070667_100797321	All Organisms → cellular organisms → Bacteria	877	Open in IMG/M
3300005367\|Ga0070667_101686236	Not Available	596	Open in IMG/M
3300005437\|Ga0070710_10530919	All Organisms → cellular organisms → Bacteria	810	Open in IMG/M
3300005439\|Ga0070711_100525939	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	978	Open in IMG/M
3300005529\|Ga0070741_10251480	Not Available	1683	Open in IMG/M
3300005533\|Ga0070734_10864110	All Organisms → cellular organisms → Bacteria → Proteobacteria	513	Open in IMG/M
3300005535\|Ga0070684_102361680	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	501	Open in IMG/M
3300005544\|Ga0070686_100637342	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	844	Open in IMG/M
3300005548\|Ga0070665_100001160	All Organisms → cellular organisms → Bacteria	32371	Open in IMG/M
3300005548\|Ga0070665_100041409	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4630	Open in IMG/M
3300005548\|Ga0070665_100051308	All Organisms → cellular organisms → Bacteria → Proteobacteria	4137	Open in IMG/M
3300005548\|Ga0070665_100105707	All Organisms → cellular organisms → Bacteria → Proteobacteria	2817	Open in IMG/M
3300005577\|Ga0068857_101802084	All Organisms → cellular organisms → Bacteria	599	Open in IMG/M
3300005617\|Ga0068859_100807884	All Organisms → cellular organisms → Bacteria	1025	Open in IMG/M
3300005718\|Ga0068866_11435407	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	505	Open in IMG/M
3300005842\|Ga0068858_100027613	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Cellvibrionaceae → Cellvibrio → unclassified Cellvibrio → Cellvibrio sp. BR	5272	Open in IMG/M
3300005844\|Ga0068862_100293375	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1494	Open in IMG/M
3300006237\|Ga0097621_100367295	All Organisms → cellular organisms → Bacteria	1283	Open in IMG/M
3300006931\|Ga0097620_100662122	All Organisms → cellular organisms → Bacteria	1136	Open in IMG/M
3300006954\|Ga0079219_12511291	Not Available	501	Open in IMG/M
3300009093\|Ga0105240_10465238	All Organisms → cellular organisms → Bacteria → Proteobacteria	1412	Open in IMG/M
3300009098\|Ga0105245_12274856	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	596	Open in IMG/M
3300009101\|Ga0105247_10029792	All Organisms → cellular organisms → Bacteria → Proteobacteria	3309	Open in IMG/M
3300009101\|Ga0105247_11625917	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	531	Open in IMG/M
3300009174\|Ga0105241_10246367	All Organisms → cellular organisms → Bacteria	1513	Open in IMG/M
3300009174\|Ga0105241_11337730	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	684	Open in IMG/M
3300009545\|Ga0105237_10023356	All Organisms → cellular organisms → Bacteria → Proteobacteria	6338	Open in IMG/M
3300009545\|Ga0105237_10100964	All Organisms → cellular organisms → Bacteria → Proteobacteria	2877	Open in IMG/M
3300009545\|Ga0105237_10434335	All Organisms → cellular organisms → Bacteria → Proteobacteria	1319	Open in IMG/M
3300009545\|Ga0105237_10496672	Not Available	1227	Open in IMG/M
3300009545\|Ga0105237_11550279	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	669	Open in IMG/M
3300009551\|Ga0105238_10119833	All Organisms → cellular organisms → Bacteria → Proteobacteria	2611	Open in IMG/M
3300009551\|Ga0105238_11083408	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	823	Open in IMG/M
3300009551\|Ga0105238_11113077	Not Available	813	Open in IMG/M
3300009553\|Ga0105249_11734878	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	697	Open in IMG/M
3300009553\|Ga0105249_11945942	All Organisms → cellular organisms → Bacteria	661	Open in IMG/M
3300010371\|Ga0134125_10344835	All Organisms → cellular organisms → Bacteria	1652	Open in IMG/M
3300010371\|Ga0134125_11649785	All Organisms → cellular organisms → Bacteria	697	Open in IMG/M
3300010375\|Ga0105239_10370930	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1617	Open in IMG/M
3300010375\|Ga0105239_10466991	All Organisms → cellular organisms → Bacteria → Proteobacteria	1433	Open in IMG/M
3300010375\|Ga0105239_10912312	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1008	Open in IMG/M
3300010375\|Ga0105239_12126293	Not Available	652	Open in IMG/M
3300010375\|Ga0105239_12580543	All Organisms → cellular organisms → Bacteria	592	Open in IMG/M
3300010375\|Ga0105239_13643415	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	500	Open in IMG/M
3300010397\|Ga0134124_11473594	All Organisms → cellular organisms → Bacteria	708	Open in IMG/M
3300010399\|Ga0134127_11608606	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	724	Open in IMG/M
3300010400\|Ga0134122_11300358	Not Available	735	Open in IMG/M
3300010401\|Ga0134121_13218965	Not Available	505	Open in IMG/M
3300011119\|Ga0105246_11200379	Not Available	698	Open in IMG/M
3300011120\|Ga0150983_10012913	All Organisms → cellular organisms → Bacteria	1515	Open in IMG/M
3300012212\|Ga0150985_108418572	All Organisms → cellular organisms → Bacteria → Proteobacteria	776	Open in IMG/M
3300012212\|Ga0150985_113195919	All Organisms → cellular organisms → Bacteria	696	Open in IMG/M
3300012469\|Ga0150984_108058119	All Organisms → cellular organisms → Bacteria	855	Open in IMG/M
3300012469\|Ga0150984_112812328	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	815	Open in IMG/M
3300012469\|Ga0150984_112864642	All Organisms → cellular organisms → Bacteria	721	Open in IMG/M
3300012469\|Ga0150984_122285794	Not Available	762	Open in IMG/M
3300012904\|Ga0157282_10348072	Not Available	538	Open in IMG/M
3300013105\|Ga0157369_10193247	All Organisms → cellular organisms → Bacteria → Proteobacteria	2138	Open in IMG/M
3300013296\|Ga0157374_11103901	All Organisms → cellular organisms → Bacteria	814	Open in IMG/M
3300013297\|Ga0157378_11747580	All Organisms → cellular organisms → Bacteria	669	Open in IMG/M
3300013306\|Ga0163162_10048601	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4251	Open in IMG/M
3300014325\|Ga0163163_10097823	All Organisms → cellular organisms → Bacteria → Proteobacteria	2955	Open in IMG/M
3300014325\|Ga0163163_10339916	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1556	Open in IMG/M
3300014325\|Ga0163163_10593159	All Organisms → cellular organisms → Bacteria → Proteobacteria	1171	Open in IMG/M
3300014325\|Ga0163163_12154241	Not Available	617	Open in IMG/M
3300014968\|Ga0157379_10049269	All Organisms → cellular organisms → Bacteria → Proteobacteria	3760	Open in IMG/M
3300014968\|Ga0157379_10117078	All Organisms → cellular organisms → Bacteria	2397	Open in IMG/M
3300014968\|Ga0157379_10662344	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	978	Open in IMG/M
3300021090\|Ga0210377_10731677	All Organisms → cellular organisms → Bacteria	542	Open in IMG/M
3300021405\|Ga0210387_10974029	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	744	Open in IMG/M
3300021479\|Ga0210410_11408114	All Organisms → cellular organisms → Bacteria → Proteobacteria	590	Open in IMG/M
3300021559\|Ga0210409_11611101	Not Available	525	Open in IMG/M
3300022894\|Ga0247778_1000774	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	25855	Open in IMG/M
3300022894\|Ga0247778_1008905	All Organisms → cellular organisms → Bacteria	2284	Open in IMG/M
3300022897\|Ga0247764_1218057	All Organisms → cellular organisms → Bacteria → Proteobacteria	580	Open in IMG/M
3300022910\|Ga0247768_1087101	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	962	Open in IMG/M
3300022917\|Ga0247777_1050620	All Organisms → cellular organisms → Bacteria	1472	Open in IMG/M
3300023265\|Ga0247780_1233499	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	501	Open in IMG/M
3300023268\|Ga0247765_1019166	All Organisms → cellular organisms → Bacteria	1478	Open in IMG/M
3300023275\|Ga0247776_10242358	All Organisms → cellular organisms → Bacteria	675	Open in IMG/M
3300025315\|Ga0207697_10490793	All Organisms → cellular organisms → Bacteria	543	Open in IMG/M
3300025899\|Ga0207642_10516809	All Organisms → cellular organisms → Bacteria	733	Open in IMG/M
3300025900\|Ga0207710_10018273	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2980	Open in IMG/M
3300025903\|Ga0207680_10025819	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3246	Open in IMG/M
3300025911\|Ga0207654_10128764	All Organisms → cellular organisms → Bacteria	1599	Open in IMG/M
3300025913\|Ga0207695_10101231	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2876	Open in IMG/M
3300025914\|Ga0207671_10013250	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	6577	Open in IMG/M
3300025916\|Ga0207663_10968231	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	682	Open in IMG/M
3300025924\|Ga0207694_10256402	Not Available	1432	Open in IMG/M
3300025927\|Ga0207687_10667685	All Organisms → cellular organisms → Bacteria	880	Open in IMG/M
3300025927\|Ga0207687_10801723	All Organisms → cellular organisms → Bacteria → Proteobacteria	803	Open in IMG/M
3300025936\|Ga0207670_11444221	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	584	Open in IMG/M
3300025942\|Ga0207689_10796235	All Organisms → cellular organisms → Bacteria	798	Open in IMG/M
3300025960\|Ga0207651_10892069	All Organisms → cellular organisms → Bacteria	792	Open in IMG/M
3300025961\|Ga0207712_10435207	All Organisms → cellular organisms → Bacteria → Proteobacteria	1109	Open in IMG/M
3300025961\|Ga0207712_11011693	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	738	Open in IMG/M
3300025972\|Ga0207668_10392916	All Organisms → cellular organisms → Bacteria	1171	Open in IMG/M
3300025972\|Ga0207668_11886181	All Organisms → cellular organisms → Bacteria	539	Open in IMG/M
3300025986\|Ga0207658_10621256	All Organisms → cellular organisms → Bacteria	972	Open in IMG/M
3300025986\|Ga0207658_11354303	Not Available	651	Open in IMG/M
3300026088\|Ga0207641_10441111	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1257	Open in IMG/M
3300026118\|Ga0207675_102157212	All Organisms → cellular organisms → Bacteria	573	Open in IMG/M
3300027869\|Ga0209579_10546542	Not Available	629	Open in IMG/M
3300028379\|Ga0268266_10001726	All Organisms → cellular organisms → Bacteria → Proteobacteria	25029	Open in IMG/M
3300028379\|Ga0268266_10041826	All Organisms → cellular organisms → Bacteria	3912	Open in IMG/M
3300028380\|Ga0268265_10198253	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1739	Open in IMG/M
3300028381\|Ga0268264_10023366	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5044	Open in IMG/M
3300028573\|Ga0265334_10022199	All Organisms → cellular organisms → Bacteria	2589	Open in IMG/M
3300028794\|Ga0307515_10041265	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	7261	Open in IMG/M
3300030990\|Ga0308178_1022969	All Organisms → cellular organisms → Bacteria	1006	Open in IMG/M
3300030990\|Ga0308178_1046470	All Organisms → cellular organisms → Bacteria	798	Open in IMG/M
3300031095\|Ga0308184_1014558	All Organisms → cellular organisms → Bacteria	786	Open in IMG/M
3300031456\|Ga0307513_10369132	All Organisms → cellular organisms → Bacteria	1178	Open in IMG/M
3300031726\|Ga0302321_100463623	All Organisms → cellular organisms → Bacteria → Proteobacteria	1392	Open in IMG/M
3300031996\|Ga0308176_12484452	Not Available	552	Open in IMG/M
3300032074\|Ga0308173_10464883	All Organisms → cellular organisms → Bacteria	1126	Open in IMG/M
3300032829\|Ga0335070_10002284	All Organisms → cellular organisms → Bacteria → Proteobacteria	22348	Open in IMG/M
3300032893\|Ga0335069_10205711	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2395	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	64.96%
Environmental	Environmental	35.04%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	64.96%
Terrestrial	Environmental → Terrestrial	34.31%
Aquatic	Environmental → Aquatic	0.73%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	46.72%
Soil	Environmental → Terrestrial → Soil	27.74%
Rhizoplane	Host-Associated → Plants → Rhizoplane	13.14%
Plant Litter	Environmental → Terrestrial → Plant Litter	5.84%
Roots	Host-Associated → Plants → Roots	5.11%
Freshwater	Environmental → Aquatic → Freshwater	0.73%
Peat	Environmental → Terrestrial → Peat	0.73%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	28.47%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	18.98%
Soil	Host-Associated → Plants → Rhizosphere → Soil	18.25%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	11.68%
Loam	Environmental → Terrestrial → Soil → Loam	7.30%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	5.84%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	3.65%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.46%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.46%
Unclassified	Host-Associated → Plants → Roots → Unclassified	1.46%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.73%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.73%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	28.47%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	18.25%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	11.68%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	9.49%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	5.84%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.11%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.65%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	3.65%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.92%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.19%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.46%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.46%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.46%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	1.46%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.73%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.73%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.73%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.73%

Habitat	Taxonomy	Distribution
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	15.33%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	14.60%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	5.84%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	5.84%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	5.11%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	4.38%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	2.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.92%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	2.92%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.19%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.19%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.19%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.19%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.19%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.46%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.46%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	1.46%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.46%
Ectomycorrhiza	Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza	1.46%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.46%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.73%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.73%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.73%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.73%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.73%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.73%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.73%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.73%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.73%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.73%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.73%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2140918013	Soil microbial communities from Great Prairies - Iowa soil (MSU Assemblies)	Environmental	Open in IMG/M
2228664021	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002070	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4	Host-Associated	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300005260	Microbial communities on the surface of kaolinite enhanced biochar from soil with fertiliser in Sydney, Australia	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005533	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2)	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012904	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S029-104C-1	Environmental	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300021090	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_b1 redo	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022894	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L049-202B-5	Environmental	Open in IMG/M
3300022897	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L051-202B-4	Environmental	Open in IMG/M
3300022910	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L016-104C-6	Environmental	Open in IMG/M
3300022917	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L154-409C-5	Environmental	Open in IMG/M
3300023265	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L079-202R-5	Environmental	Open in IMG/M
3300023268	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L106-311C-6	Environmental	Open in IMG/M
3300023275	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L199-509C-5	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028573	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG	Host-Associated	Open in IMG/M
3300028794	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM	Host-Associated	Open in IMG/M
3300030990	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_149 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031095	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_158 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031456	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM	Host-Associated	Open in IMG/M
3300031726	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_1	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Iowa-Corn-GraphCirc_02974830	2140918013	Soil	MSSMTSWRPANTERTAGDELLSDYRTRRALEESERAEQKRADSAEQYSAVNSAEHRIRAWEKVHQLRMPSDPLHPALAAIATATQLTLEEIRNEQALXXXXNAPGTGRDRDGHAAHAGRHTE
ICCgaii200_02696842	2228664021	Soil	MSSMTSWRPANTERTAGDELLSDYRTRRALEESERAEQKRADSAEQYSAVNSAEHRIRAWEKVHQLRMPSDPLHPALAAIATATQLTLEEIRNEQALRAARRASAGV
INPhiseqgaiiFebDRAFT_1014687712	3300000364	Soil	MSSMTPLRPANTARSAGDEILSDYRQRRALEESERARQKRVDSAEQYSDLNSADLRIRAWERVHQLCMPSDPLHPALAAIATATHLTLEDVQNEQRLRFARAAGRV*
INPhiseqgaiiFebDRAFT_1014699442	3300000364	Soil	MSSMTPLRPANTARSAGDEILSDYRQRRALEESERARQKRVDSAEQYSELNSADLRIRAWERVHQLCMPSDPLHPALAAIATATHLTLEDVQNEQRLRFARAAGRV*
JGI10216J12902_1178637802	3300000956	Soil	MSSMMSVPFARSERFTTAGDELLCDYRQRRALEERERVELRRMDQAEQSSTLNSADLRILAWEKVHQLRMPSDPQHPALKAISAATQLTLADIQNEQRLR
JGI24750J21931_10918192	3300002070	Corn, Switchgrass And Miscanthus Rhizosphere	ILSDYRQRRALEERERAELKRVDLAEQHSALNSADLRIRAWEKVHGLRMPADSTHPVLEAIAAATQLTLLDVQNQQRLRSAQRASAGA*
C688J35102_1200548912	3300002568	Soil	MSSMMSMPFATNKPATGDELFFDYRQRRVQEENERADLKRVDQAEQCSGSNSADRRIRAWEKVHHLRMPSDPQHPALTAIAAATQLTLADVRNEQRLRSARCASAGV*
Ga0063454_1002398193	3300004081	Soil	MSSMMSMPFATNKLATGDELFFDYRQRRVQEENERADLKRVDQAEQCSGSNSADRRIRAWEKVHHLRMPSDPQHPALSAIAAATQLTLADVRNEQRLRSARCASAG
Ga0074072_100001740	3300005260	Soil	MSSTMSMPFATRKQFPASGDELFFDYRQRRALEEQERADLKVADQAQQCSALNSAASRIRAWEKVHHLRMPSDPQHLVLGAIAVATQLTLGEIQNEQWLRSVQRASVGL*
Ga0074072_10013637	3300005260	Soil	MTSVTFLHSARFNSSGDEILSDYRQRKAIEENERAEQRRADSAEQYSALNSAELRIRAWERIHQLRLPSDASHPVVAAIVRATQLTVEDVLNEQRLRSARRASVGV*
Ga0068869_1004475872	3300005334	Miscanthus Rhizosphere	MSSMLSTPFATGEQFTTARDEHLLDYRHRRALEERERADLKRADQAEQCAVFNSPDLRIRAWEKVHQLRMPSDPQHPALGAIALATQLTLADVQNEQRLRSARRASAGV*
Ga0070666_100843084	3300005335	Switchgrass Rhizosphere	MNAMTSLPVAKDERFTFRDAEILSDYRQRRALEERERAELKRVDLAEQHSALNSADVRIRAWEKVHGLRMPADSTHPVLEAIAAATQLTLLDVQNQQRLRSAQRASAGA*
Ga0070666_104960891	3300005335	Switchgrass Rhizosphere	MSSMTSWRPENVERSAGGEFLSDYRTRRALEESERAEQKRADSAEQYSTLNSADVRIRAWEKVHQLRMPSDPSHPALAAIATATHLTLEDIRNEQALRSARRAS
Ga0070666_110681541	3300005335	Switchgrass Rhizosphere	MPFANNKPATGDDLFIDFRQRRAQEENERADLKRVDQAEQCCGSNSADRRIRAWEKVHHLRMPSDPQHPALSAIAAATQLTLADVRNEQRLRSARCASAGV*
Ga0070689_1010498802	3300005340	Switchgrass Rhizosphere	MNAMTSLPVAKDERFTFRDAEILSDYRQRRALEERERAELKRVDLAEQHSALNSADLRIRAWEKVHGLRMPADSTHPVLEAIAAATQLTLLDVQNQQRLRSAQRASAGA*
Ga0070668_1005517991	3300005347	Switchgrass Rhizosphere	MSSMTSWRPENVERSAGGEFLSDYRTRRALEESERAEQKRADSAEQYSTLNSADVRIRAWEKVHQLRMPSDPSHPALAAIATATQLTLEDIRNEQALRSARRASAGV*
Ga0070667_10000363613	3300005367	Switchgrass Rhizosphere	ERFTFRDAEILSDYRQRRALEERERAELKRVDLAEQHSALNSADVRIRAWEKVHGLRMPADSTHPVLEAIAAATQLTLLDVQNQQRLRSAQRASAGA*
Ga0070667_1005630613	3300005367	Switchgrass Rhizosphere	MNATMTLLVPKKQHSNFDEAEVLSDYRQRRALAEYERAQLKRAQIAEQHSALNCADLRIRAWEKVHGLRMPSAPRHPVLAAIAAATQLTLAEVQNEQRLRRAPRASAKV*
Ga0070667_1007973211	3300005367	Switchgrass Rhizosphere	MVSMTSWRPAKRERDAGDELLTDYRERRALEESERAEQKRMASAEQYSALNSADLRIRAWEKVHQLRMPSNPLHPALAAIATATQLTLEEV
Ga0070667_1016862361	3300005367	Switchgrass Rhizosphere	RERRRLRTVLTCGDRHMSSMTSWRPENVERSAGGEFLSDYRTRRALEESERAEQKRADSAEQYSTLNSADVRIRAWEKVHQLRMPSDPSHPALAAIATATQLTLEDIRNEQALRSARRASAGV*
Ga0070710_105309191	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MNAMTTLLAKDERFTFRDAEILSDYRQRRALEERERAELKLADMAEQRSALNSVDVRIRAWEKVHGLRMPSDPRHPALQAIAAATQLALADILNEQGLRSARRASAGA*
Ga0070711_1005259393	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MNAMTTWLAKDERFTVRDAEVLSDYRQRRALEELERAELKRADLAEQHSALNSVDVRIRAWEKVHGLRMPSDPRHPALQAIAAATQLALADILNEQGLRSARRASAGA*
Ga0070741_102514803	3300005529	Surface Soil	MDSKTSWPRTIRERLATTDDAILSDYRERRAFEALELAERKRVGFAEQYSAVNSPDARIRAWEKVHHLCMPADPMHPVLDAIATATQLTLADVRNEQRLRAARRASAGV*
Ga0070734_108641101	3300005533	Surface Soil	MNATMTFPVAKDERITSRDVEIPADYRQRRAMEELERAELKRVELAAQHSPVNSVEVRIRAWENAHGLRMPSDPKHRVLHAIAAATQLSLADVLNEQGLRSTRRASVGA*
Ga0070684_1023616801	3300005535	Corn Rhizosphere	MPFANNKPATGDDLFIDFRQRRAQEENERADLKRVDQAEQCCGSNSADRRIRAWEKVHHLRMPSDPQHPALSAIAAATQLTLADVRNEQRLRSARCAS
Ga0070686_1006373421	3300005544	Switchgrass Rhizosphere	MNVMTSLPVAKDERLTFRDAEILSDYRQRRALEERERAELKRVDLAEQHSALNSADLRIRAWEKVHGLRMPADSTHPVLEAIAAATQLTLLDVQNQQRLRS
Ga0070665_1000011602	3300005548	Switchgrass Rhizosphere	MNATMTLLVPKKQHSNFDEAEVLSDYRQRRALAEYERAQLKRAQIAEQHSALNCADLRIRAWEKVHGLRMPSAPRHPVLAAIAAATQLTLAEVQNEQRLRRAPRVSAKV*
Ga0070665_1000414094	3300005548	Switchgrass Rhizosphere	MNVMTSLPVAKDERFTFRDAEILSDYRQRRALEERERAELKRVDLAEQHSALNSADLRIRAWEKVHGLRMPADSTHPVLEAIAAATQLTLLDVQNQQRLRSAQRASAGA*
Ga0070665_1000513087	3300005548	Switchgrass Rhizosphere	MSSMTSWRPENVERSAGGEFLSDYRTRRALEESERAEQKRADSAEQYSTLNSADVRIRAWEKVHQLRMPSDPSHPALAAIATATHLTLEDIRNEQALRSARRASTGV*
Ga0070665_1001057074	3300005548	Switchgrass Rhizosphere	MVSMTSWRPAKRERDAGDELLTDYRERRALEESERAEQKRMASAEQYSALNSADLRIRAWEKVHQLRMPSNPLHPALAAIATATQLTLEEVRNEQRLRFAR*
Ga0068857_1018020842	3300005577	Corn Rhizosphere	MSSMTSWRPENVERSAGGEFLSDYRTRRALEESERAEQKRADSAEQYSTLNSADVRIRAWEKVHQLRMPSDPSHPALAAIATATQLTLEEIRNEQALRAARR
Ga0068859_1008078842	3300005617	Switchgrass Rhizosphere	MTSMTSWRPANRERSAGDELLTDYRERRALEESERAEQKRVDSAEQYSALNSADLRIRAWEKVHQLRMPSDPAHPALTAIAIATQLTLEDVQNEQRLRFARRASAGA*
Ga0068866_114354071	3300005718	Miscanthus Rhizosphere	WRPANGERSTPMGDDLLSDYRERRALEESERAEQRRADSAEQYSTLNSVDLRIRAWERVHQLRMPSDPLHPALAAIATATQLTLEDVQNEQRLRIARRASAGV*
Ga0068858_1000276135	3300005842	Switchgrass Rhizosphere	MSSMLSMPFANNKPATGDDLFFDFRQRRAQEENERADLKRVDQAEQCSGSNSADRRIRAWEKVHHLRMPSDPQHPALSAIAAATQLTLAAVQNEQRLRSARCASAGV*
Ga0068862_1002933754	3300005844	Switchgrass Rhizosphere	MSSMTSLRPANMERSAGDEILSDYRQRRALEESERAERKRVDSAEQYSELNSADLRIRAWEKVHQLRMPSDPLHPALAAIATATQLTLEDVQNEQRLRIARRASGGV*
Ga0097621_1003672952	3300006237	Miscanthus Rhizosphere	MNAMMALPVAKDERFTSRDVEVLADYRQRRALEEFERAELKRVDLAEQHSAMNSVDARIRAWEKVHGLRMPSDPKHRVLHAIAAATQLSLADVLNEQGLRSTRRASAGA*
Ga0097620_1006621222	3300006931	Switchgrass Rhizosphere	MRSMTSMPFATSEHATMAQDGLLSDYRQRRALEELERAELKRADQAQQCATLNSADLRIRAWEKVHQLCMPSDPHHPALGAIAAATQLTLADIQNEQRLRSARRASAGA*
Ga0079219_125112911	3300006954	Agricultural Soil	MTATSFLLASADRDRFRSADDQLLSDYRQRRALEESERAERRREQHAQQHSVLNSADLRIRAWEKVHHLRMPSDPQHLVLGAIAVATQLTLGDIQNEQRLRSAQRASVGV*
Ga0105240_104652383	3300009093	Corn Rhizosphere	MSSMVSMPFANNKPATGDDLFIDFRQRRAQEESERADLKRVDQAEQCCGSNSADRRIRAWEKVHHLRMPSDPQHPALSAIAAATQLTLADVRNEQRLRSARCASAGA*
Ga0105245_122748562	3300009098	Miscanthus Rhizosphere	MNAMMTLPIEKKQRSTFADTEILSDYRQRRALEEHERAELKRADLAEQHSALNCADLRIRAWEKVHGLRMPSDSEHPVLNAIATATQLTLAEVQNEQRLRYARRASAGV*
Ga0105247_100297923	3300009101	Switchgrass Rhizosphere	MFSHDAGDPHMSSMLSMPFANNKPATGDDLFFDFRQRRAQEENERADLKRVDQAEQCSGSNSADRRIRAWEKVHHLRMPSDPQHPALSAIAAATQLTLAAVQNEQRLRSARCASAGV*
Ga0105247_116259171	3300009101	Switchgrass Rhizosphere	MNAMVTLPTEKERRSTFADAEILSDYRQRRALEEHERAELKRADLAEQHSTLNCADLRIRAWEKVHGLRMPSDSEHPVLDAIATATQLTLA
Ga0105241_102463673	3300009174	Corn Rhizosphere	MSSMMSVPFTINRPTRGDELFVDYRQRRAQEEDERADLKRADQAEQCSGMNSADRRIRAWERVHHLRMPSDPQHPALSAIAAATQLTLADVQNEQRLRSARCASAGV*
Ga0105241_113377301	3300009174	Corn Rhizosphere	MSSMVSMPFANNKPATGDDLFIDFRQRRAQEENERADLKRVDQAEQCCGSNSADRRIRAWEKVHHLRMPSDPQHPALSAIAAATQLTLADVRNEQRLRSARCASAGV*
Ga0105237_100233566	3300009545	Corn Rhizosphere	MSSMMSMPFANNKPATGDDLFFDYRQRRAQEEIERADLKRVDQAEQCSGSNSADRRIRAWEKVHHLRMPSDPQHPALTAIAAATQLTLAAVRNEQRLRSARCASAGA*
Ga0105237_101009643	3300009545	Corn Rhizosphere	MNATMTLLVAKKQHSNFDEAEVLSDYRQRRALAEYERAQLKRAQIAEQHSALNCADIRIRAWEKVHGLRMPSAPRHPVLAAIAAATQLTLAEVQNEQRLRRAPRVSAKV*
Ga0105237_104343352	3300009545	Corn Rhizosphere	MNAMTTLPVVKDERFTFRDVEILADYRQRRALEEFERAQLKRADLAEQHSAVNSVDVRIRAWEKVHGLRMPSDPKHPALRAIAAATQLALADVLNEQGLRSARRASAGA*
Ga0105237_104966723	3300009545	Corn Rhizosphere	MSSMMSMPFANNKPTHGDDLFVDYRQRRAQEEDERADLKRADQAEQCSGLNSADRRIRAWEKVHHLRMPSDPQHPALSAIAAATQLTLADVQNEQRLRSARRASAGV*
Ga0105237_115502791	3300009545	Corn Rhizosphere	MSSMNSLRPANRDRFTSGGDDLLSDYRERRALEESERAEQRRADSAEQYSSLNSVDLRIRAWERVHQLRMPSDPLHPALAVIATATQLTLEDVQNEQRLRSARRASAGV*
Ga0105238_101198333	3300009551	Corn Rhizosphere	MSSMTSWRPARTERFTSTGDELLCDYRQRRALEESDRAEQKRLEAAEQYSAVNTAELRIRAWEKVHQLRMPSDILHPALAAIALATQLTLEDVQNEQRLRSARRASAGA*
Ga0105238_110834081	3300009551	Corn Rhizosphere	PTRVLAFAAEIGIMTSMTSWRPANRERSAGDELLSDYRERQALEESERAEQRRVDLAEQYSALNSADVRIRAWEKVHRLRMPSDPLHPALAAIATATQLTLELVQNEQRLRSARRASAGV
Ga0105238_111130773	3300009551	Corn Rhizosphere	GDDLFVDYRQRRAQEEDERADLKRADQAEQCSGLNSADRRIRAWEKVHHLRMPSDPQHPALSAIAAATQLTLADVQNEQRLRSARRASAGV*
Ga0105249_117348782	3300009553	Switchgrass Rhizosphere	YMSSMTSLRPANMERSAGDEILSDYRQRRALEESERAERKRVDSAEQYSELNSADLRIRAWEKVHQLRMPSDPLHPALAAIATATQLTLEDVQNEQRLRIARRASGGV*
Ga0105249_119459422	3300009553	Switchgrass Rhizosphere	TNNKPATGEDLFIDYRQRRAQEENERADLKRVDQAEQCSGSNSADRRIRAWEKVHHLRMPSDPQHPALSAIAAATQLTLADVRNEQRLRYAL*
Ga0134125_103448353	3300010371	Terrestrial Soil	MNTMTTWPAKDERFTFRDADILPDYRQRRALEERDRAEQKREEVEEQHSGLNSVDLRIRAWEKVHGLRMPSDPKHPVLQAIAAATQLALTDILNEQELRSARRTSAGT*
Ga0134125_116497852	3300010371	Terrestrial Soil	MSSMTSWRPTKTERFTSTGDELLCDYRQRRALEESDRTEQRRLEAAEQYSAVNTAELRIRAWEKVHQLRMPSDILHPALAAIALATQLTLEDVQNEQRLR
Ga0105239_103709301	3300010375	Corn Rhizosphere	GDPHMSSMMSTPFATRKQFPTSGDELFIDYRQRRALEEQERADLKVANQAQQYSALNSAASRIRAWEKVHHLRMPSDPQHPVLGAIAAATQLTLEDIQNEQRLRSAQHVSVGV*
Ga0105239_104669911	3300010375	Corn Rhizosphere	TGDELLSDYRERRAIAEGERAEQKRAESAEQYSTVNSADVRIRAWEKVHQLCMPSDPSHPALVAIATATQLTLEDVQNEQRLRSARRKSAGV*
Ga0105239_109123122	3300010375	Corn Rhizosphere	ANNKPATGDDLFIDFRQRRAQEENERADLKRVDQAEQCSGSNSADRRIRAWEKVHHLRMPSDPQHPALTAIAAATQLTLADVRNEQRLRSARCASAGV*
Ga0105239_121262932	3300010375	Corn Rhizosphere	MSSMTSWRPTKTERFTSTGDELLCDYRQRRALEENDRAEQKRLESAQQYSAVNSAELRIRAWEKVHQLRMPSDILHPALAAIALATQLTLEDVQNEQRLRSARRASAGT*
Ga0105239_125805431	3300010375	Corn Rhizosphere	MVSMTSWRPAKRERDAGDELLTDYRERRALEESERAEQKRMASAEQYSALNSADLRIRAWEKVHQLRMPSNPLHPALAAIATATQL
Ga0105239_136434151	3300010375	Corn Rhizosphere	MSSMMSMPFANNKPATGDELFFDYRQRRAQEENERADLKRVDQAEQCSGSNSADRRIRAWEKVHHLRMPSDPQHPALSAIAAATQLTLADVRNEQRLRSARC
Ga0134124_114735941	3300010397	Terrestrial Soil	MTSMSSLPPFHGERFSSHDDRLLSDYRERQALELSERAERRRADSAEQSSLLNSADLRIRAWEKVHQLRMPSDPLHPALAAIATATQRTLEDVRNEQRLRSARRASAGA*
Ga0134127_116086062	3300010399	Terrestrial Soil	MTSTSFFLASADRERFRSTDDQLLYDYRQRRAIEETERAERRREQHAQQHSVLNSADLRIRAWEKVHQLRLPSNPSHPALALIAVATQLTLEDVLNEQRLRAARRASATT*
Ga0134122_113003582	3300010400	Terrestrial Soil	MTFLATGEPHMSSMLSTPFATGEQFTTARDEHLLDYRHRRALEERERADLKRADQAEQCAVFNSPDLRIRAWEKVHQLRMPSDPQHPALGAIALATQLTLADVQNEQRLRSARRASAGV*
Ga0134121_132189651	3300010401	Terrestrial Soil	TPFATGEQFTTARDEHLLDYRHRRALEERERADLKRADQAEQCAVFNSPDLRIRAWEKVHQLRMPSDPQHPALGAIALATQLTLADVQNEQRLRSARRASAGV*
Ga0105246_112003792	3300011119	Miscanthus Rhizosphere	FATSEHATMAQDGLLSDYRQRRALEELERAELKRADQAQQCATLNSADLRIRAWEKVHQLCMPSDPHHPALGAIAAATQLTLADIQNEQRLRSARRASAGA*
Ga0150983_100129133	3300011120	Forest Soil	MTSVTSLHSARFNSSGDEILSDYRQRKAIEENERAEQRRADSAEQYSPLNSAGLRIRAWEKVHQLRMPSDASHPVVAAIVRATQLTVEDVLNEQRLRSARRASVGV*
Ga0150985_1084185722	3300012212	Avena Fatua Rhizosphere	MSSMMSVPFAMGERSTTAGDELLLDYRQRRALEERERADLKDADLAEQRSALNSADRRIRAWEKVHQLRMPSDDPQHPVLTAIALGTQLTLADVQN
Ga0150985_1131959191	3300012212	Avena Fatua Rhizosphere	MTSMPFSTSEAITIAQDGLLSDYRQRRALEEFERAELKRADQAQQCATLNSADLRIRAWEKVHQLRMPSDPHHPALGAIA
Ga0150984_1080581192	3300012469	Avena Fatua Rhizosphere	MSSITSWRPPHTERSTSGEELLSDYRTRRALEERERAEKKRVDSAQQFSALNSADLRIRAWEKVHQLSMPSDPLHPALAAIAIATQLTLEDVRNEQRLRFARRASTEV*
Ga0150984_1128123281	3300012469	Avena Fatua Rhizosphere	MTSMTSWRPANTERSTPAGDDLLSDYRQRKALEESERAEQKRADSAQQFCDLNSPDVRIRAWEKVHQLRMPSDPLHPALMAIATATQLTLEDVQNEQR
Ga0150984_1128646421	3300012469	Avena Fatua Rhizosphere	MTSMPFATSEPIATAQDGLLSDYRQRRALEEFERAELKRADQAQQCATLNSADLRIRAWEKVHQLRMPSDPHHPALAAIAAATQLTLADIQNEQRLRSARLASAG
Ga0150984_1222857942	3300012469	Avena Fatua Rhizosphere	MTSMPFSTSEAITIAQDGLLSDYRQRRALEEFERAELKRADQAQQCATLNSADLRIRAWEKVHQLCMPSDPQHPALGAIAAATQLTLADVQNEQRLRSARRAAAGA*
Ga0157282_103480721	3300012904	Soil	MSSMMSEPFTRRERFATAGEELLSDYRQRRALEEREQIDLRYADQAEQRSAMNSADVRILAWEKVHQLRMPSDPNHPALAAIAAATQLTLADVQNEQHLRAARRASAGV*
Ga0157369_101932472	3300013105	Corn Rhizosphere	MFSHYARDPHMSSMMSMPFANNKPATGDDLFIDFRQRRAQEENERADLKRVDQAEQCCGSNSADRRIRAWEKVHHLRMPSDPQHPALSAIAAATQLTLADVRNEQRLRSARCASAGV*
Ga0157374_111039011	3300013296	Miscanthus Rhizosphere	MSSMMSMPFANNKPATGDDLFIDFRQRRAQEENERADLKRVDQAEQCCGSNSADRRIRAWEKVHHLHMPSDPQHPALSAIAAATQLTLADVRNEQRLRSARCALAGV*
Ga0157378_117475802	3300013297	Miscanthus Rhizosphere	MTFLATGEPHMSSMLSTPFATGEQFTTARDEHLLDYLHRRALEERERADLKRADQAEQCAVFNSPDLRIRAWEKVHQLRMPSDPQHPALGAIALATQL
Ga0163162_100486016	3300013306	Switchgrass Rhizosphere	MTSLPVAKDERFTFRDAEILSDYRQRRALEERERAELKRVDLAEQHSALNSADLRIRAWEKVHGLRMPADSTHPVLEAIAAATQLTLLDVQNQQRLRSAQRASAGA*
Ga0163163_100978235	3300014325	Switchgrass Rhizosphere	MTSLPVAKDERFTFRDAEILSDYRQRRALEERERAELKRVDLAEQHSALNSADVRIRAWEKVHGLRMPADSTHPVLEAIAAATQLTLLDVQNQQRLRSAQRASAGA*
Ga0163163_103399162	3300014325	Switchgrass Rhizosphere	MNAMVTLPTEKERRSTFADTEILSDYRQRRALEEHERAELKRADLAEQHSALNCADLRIRAWEKVHGLRMPSDSEHPVLDAIATATQLTLAEVQNEQRLRYARRASAGV*
Ga0163163_105931592	3300014325	Switchgrass Rhizosphere	MNEMTTLLAKDERFTFGDAEILSDYRQRRAPALNSVDLRIRAWEKVHGLRMPSDPKHPALQAIAAATQLALADVLNEQGLRSARRASAGT*
Ga0163163_121542411	3300014325	Switchgrass Rhizosphere	MSSMTSWRPARTERFTSTGDELLYDYRQRRALEESDRAEQKRLEAAEQYSAVNTAELRIRAWEKVHQLRMPSDILHPALAAIALATQLTLEDVQNEQRLRSARRASAGA*
Ga0157379_100492693	3300014968	Switchgrass Rhizosphere	MSSTMSMPFANNKPATGDDLFIDFRQRRAQEENERADLKRVDQAEQCCGSNSADRRIRAWEKVHHLRMPSDPQHPALSAIAAATQLTLADVRNEQRLRSARCASAGV*
Ga0157379_101170783	3300014968	Switchgrass Rhizosphere	MNAMVTLPTEKERRSTFADAEILSDYRQRRALEEHERAELKRADLAEQHSTLNCADLRIRAWEKVHGLRMPSDSEHPVLDAIATATQLTLAEVQNEQRLRYARRASAGV*
Ga0157379_106623441	3300014968	Switchgrass Rhizosphere	MNAMMTLPVAKDEQFTFRDAEVLSDYRQRRALEERERAELKRADLAEQHSAVNSVDRRIRAWEKVHGLRMPSDPKHSALHAIAAATQLTLADVLNEQGLRSARTASAGA*
Ga0210377_107316772	3300021090	Groundwater Sediment	MSSMLSVPLAQSERFTTAGEEVLSDFRQRRPLEERERADLKRAELAQQCSDLNSADLRIRAWDKVHQLRMPSDPRHPALAA
Ga0210387_109740291	3300021405	Soil	MSSMMSLPFATRTQSPTSGDELFFDYRQRRALEEQERADLKVADQAQQCSALNSAASRIRAWEKVHHLRMPSDPQHLVLGAIAVATQLTLGDIQNEQRLRSAQRASVGV
Ga0210410_114081142	3300021479	Soil	MSSMMSMPFATRTQSPTSGDELFFDYRQRRALEEQERADLKVADQAQQCSALNSAASRIRAWEKVHHLRMPSDPQHLVLGAIAVATQLTLGDIQNEQRLRSAQRASVGV
Ga0210409_116111011	3300021559	Soil	MTSVTSLHSARFNSSGDEILSDYRQRKAIEENERAEQRRADSAEQYSALNSADLRIRAWEKIHQLRMPSDASHPVVAAIVRATQLTVEDVLNEQRLRSARRASVGV
Ga0247778_100077425	3300022894	Plant Litter	MNLTKNAPAVNSDRYVPPGDELLSDYRERRSLEERDRVERKRVDAAAQHSVENSADLRIRAWEKVHQLRMPSDPGHPALGAIAEATRLTLADVQNEQRLRAARRASAEV
Ga0247778_10089054	3300022894	Plant Litter	MTSMSSLPPFHGERFSSHDDRLLSDYRERQALELSERAERRRADSAEQSSLLNSADLRIRAWEKVHQLRMPSDPLHPALAAIATATQLTLEDVRNEQRLRSARRASAGA
Ga0247764_12180572	3300022897	Plant Litter	MSSTMSMPFATRKQFPTSGEEIFFDYRQRRALEEQERADLKIADQAQQCSALNSAAARIRAWEKVHNLRMPSDPEHVVLGAIAVATHLTLGDVQNEQRLRSAQRASVGV
Ga0247768_10871011	3300022910	Plant Litter	MSSMISPFAHTEHFTTRSDEILFDYRQRRALEERERADLKRADVAQQCSDLNTPDLRIRAWEKVHQLRMPSDPHHPALRAIAAATQLTLAVVLDEQRLRSARRASA
Ga0247777_10506203	3300022917	Plant Litter	MSVTFAKGERFTTGDELLYDYRQRRALEERERTDLRCADQAEQRSVMNSAELRILAWEKVHQLRMPLDPQHPALEAIAAATQLTLADVQNEQHLRAARRASAGV
Ga0247780_12334991	3300023265	Plant Litter	MSSMTSWRPGIGERTPGDELLFNYRERRALEEEQRAEQKRVDSAEQVLIQNGADVRIRAWEKVHQLRMPSDPLHPALAAIAIATQLTLEDIHNEQ
Ga0247765_10191662	3300023268	Plant Litter	MSVTFAKGERFTTGDELLYDYRQRRALEERERTDLRCADQAEQRSVMNSAELRILAWEKVHQLRMPLDPQHPALEAIAAATQLTLADVQNEQRLRAARRASAEV
Ga0247776_102423581	3300023275	Plant Litter	MSSMMSVPFARSERFATAGDELLSDYRQRRALEEREQIDLRCADQAEQRSAMNSADLRIQAWEKVHQLRMPSDPNHPALAAIAAAT
Ga0207697_104907931	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MRSMTSMPFATSEHATMAQDGLLSDYRQRRALEELERAELKRADQAQQCATLNSADLRIRAWEKVHQLCMPSDPHHPALGAIAAATQLTLADIQN
Ga0207642_105168091	3300025899	Miscanthus Rhizosphere	MSSMIAVRPEKSERYGAAGDELLIDYRQRRAHEERERAELRRVNVAEQHSASNSVDVRIRAWEKVHHLRMPSDPAHPALAAIAAATQLTLEDILNEQR
Ga0207710_100182733	3300025900	Switchgrass Rhizosphere	MSSMLSMPFANNKPATGDDLFFDFRQRRAQEENERADLKRVDQAEQCSGSNSADRRIRAWEKVHHLRMPSDPQHPALSAIAAATQLTLAAVQNEQRLRSARCASAGV
Ga0207680_100258192	3300025903	Switchgrass Rhizosphere	MSMPFANNKPATGDDLFIDFRQRRAQEENERADLKRVDQAEQCCGSNSADRRIRAWEKVHHLRMPSDPQHPALSAIAAATQLTLADVRNEQRLRSARCASAGV
Ga0207654_101287643	3300025911	Corn Rhizosphere	MSSMMSVPFTINRPTRGDELFVDYRQRRAQEEDERADLKRADQAEQCSGMNSADRRIRAWERVHHLRMPSDPQHPALSAIAAATQLTLADVQNEQRLRSARCASAGV
Ga0207695_101012313	3300025913	Corn Rhizosphere	MSSMVSMPFANNKPATGDDLFIDFRQRRAQEENERADLKRVDQAEQCCGSNSADRRIRAWEKVHHLRMPSDPQHPALSAIAAATQLTLADVRNEQRLRSARCASAGV
Ga0207671_100132506	3300025914	Corn Rhizosphere	MSSMMSMPFANNKPATGDDLFFDYRQRRAQEEIERADLKRVDQAEQCSGSNSADRRIRAWEKVHHLRMPSDPQHPALTAIAAATQLTLAAVRNEQRLRSARCASAGA
Ga0207663_109682312	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MNAMTTWLAKDERFTVRDAEVLSDYRQRRALEELERAELKRADLAEQHSALNSVDVRIRAWEKVHGLRMPSDPRHPALQAIAAATQLALADILNEQGLRSARRASAGA
Ga0207694_102564023	3300025924	Corn Rhizosphere	MSSMTSWRPARTERFTSTGDELLCDYRQRRALEESDRAEQKRLEAAEQYSAVNTAELRIRAWEKVHQLRMPSDILHPALAAIALATQLTLEDVQNEQRLRSARRASAGA
Ga0207687_106676852	3300025927	Miscanthus Rhizosphere	MNAMMTLPIEKKQRSTFADTEILSDYRQRRALEEHERAELKRADLAEQHSALNCADLRIRAWEKVHGLRMPSDSEHPVLNAIATATQLTLAEVQNEQRLRYARRASAGV
Ga0207687_108017231	3300025927	Miscanthus Rhizosphere	MNAMMALPVAKDERFTSRDVEVLADYRQRRALEEFERAELKRVDLAEQHSAMNSVDARIRAWEKVHGLRMPSDPKHRVLHAIAAATQLSLADVLN
Ga0207670_114442212	3300025936	Switchgrass Rhizosphere	MNAMTSLPVAKDERFTFRDAEILSDYRQRRALEERERAELKRVDLAEQHSALNSADLRIRAWEKVHGLRMPADSTHPVLEAIAAATQLTLLDVQNQQRLRSAQRASAGA
Ga0207689_107962352	3300025942	Miscanthus Rhizosphere	MSSMLSTPFATGEQFTTARDEHLLDYRHRRALEERERADLKRADQAEQCAVFNSPDLRIRAWEKVHQLRMPSDPQHPALGAIALATQLTLADVQNEQRLRSARRASAGV
Ga0207651_108920692	3300025960	Switchgrass Rhizosphere	MRSMTSMPFATSEHATMAQDGLLSDYRQRRALEELERAELKRADQAQQCATLNSADLRIRAWEKVHQLCMPSDPHHPALGAIRVGCVPSRRSLV
Ga0207712_104352073	3300025961	Switchgrass Rhizosphere	FANNKPATGDDLFIDFRQRRAQEENERADLKRVDQAEQCSGSNSADRRIRAWEKVHHLRMPSDPQHPALSAIAAATQLTLADVRNEQRLRYAL
Ga0207712_110116931	3300025961	Switchgrass Rhizosphere	MNVMTSLPVAKDERFTFRDAEILSDYRQRRALEERERAELKRVDLAEQHSALNSADLRIRAWEKVHGLRMPADSTHPVLEAIAAATQLTLLDVQNQQRLRSAQRASAGA
Ga0207668_103929162	3300025972	Switchgrass Rhizosphere	MSSMTSWRPENVERSAGGEFLSDYRTRRALEESERAEQKRADSAEQYSTLNSADVRIRAWEKVHQLRMPSDPSHPALAAIATATQLTLEDIRNEQALRSRPVPD
Ga0207668_118861811	3300025972	Switchgrass Rhizosphere	MSSMISWRPANRERAPGDEILSDHRERLAFAQSERAEQKRADSAEQYSAVNSADLRIRAWEKVHQLRMPSDPSHPALVAIAMATQLTMEDILNEQRLRSARRA
Ga0207658_106212561	3300025986	Switchgrass Rhizosphere	MVSMTSWRPAKRERDAGDELLTDYRERRALEESERAEQKRMASAEQYSALNSADLRIRAWEKVHQLRMPSDPLHPALAAIATATQLTLEDIRNEQRLRSARRAPAGV
Ga0207658_113543032	3300025986	Switchgrass Rhizosphere	MSSMTSWRPENVERSAGGEFLSDYRTRRALEESERAEQKRADSAEQYSTLNSADVRIRAWEKVHQLRMPSDPSHPALAAIATATQLTLEDIRNEQALRSARRASAGV
Ga0207641_104411111	3300026088	Switchgrass Rhizosphere	MRSMTSMPFATSEHATMAQDGLLSDYRQRRALEELERAELKRADQAQQCATLNSADLRIRAWEKVHQLCMPSDPHHPALGAIAAATQLTLADIQNEQRLRSA
Ga0207675_1021572121	3300026118	Switchgrass Rhizosphere	MNSMTSWRPASRERVPGDEPLSDYRERRAFEEGQRAEQKRADSAEQYSTLNSAGVRIRAWEKVHQLRMPSDPSHPALAAIATATQLTLEDVQNEQRLRSA
Ga0209579_105465422	3300027869	Surface Soil	ILSDYRQRKAIEENERAEQRRADSAEQYSALNSAELRIRAWEKIHQLRMPSDASHPVVAAIVRATQLTVEDVLNEQRLRSARRASVGV
Ga0268266_1000172618	3300028379	Switchgrass Rhizosphere	MNATMTLLVPKKQHSNFDEAEVLSDYRQRRALAEYERAQLKRAQIAEQHSALNCADLRIRAWEKVHGLRMPSAPRHPVLAAIAAATQLTLAEVQNEQRLRRAPRVSAKV
Ga0268266_100418264	3300028379	Switchgrass Rhizosphere	MSSMTSWRPENVERSAGGEFLSDYRTRRALEESERAEQKRADSAEQYSTLNSADVRIRAWEKVHQLRMPSDPSHPALAAIATATHLTLEDIRNEQALRSARRASTGV
Ga0268265_101982534	3300028380	Switchgrass Rhizosphere	MSSMTSLRPANMERSAGDEILSDYRQRRALEESERAERKRVDSAEQYSELNSADLRIRAWEKVHQLRMPSDPLHPALAAIATATQLTLEDVQNEQRLRIARRASGGV
Ga0268264_100233661	3300028381	Switchgrass Rhizosphere	AEILSDYRQRRALEERERAELKRVDLAEQHSALNSADVRIRAWEKVHGLRMPADSTHPVLEAIAAATQLTLLDVQNQQRLRSAQRASAGA
Ga0265334_100221993	3300028573	Rhizosphere	MTSGTSLHSSRFNSSGDEILSDYRQRKAIEENERAEQRRADSAEQYSALNSADLRIRAWEKVHQLRMPSDASHPVVAAIVRATQLTVEDVLNEQRLRSARRASVGV
Ga0307515_100412657	3300028794	Ectomycorrhiza	MSSMMSVPFVRNVRFTTAGDELLCDYRQRRALEERERIDLRCADQAEQRSAMNSADLRILAWEKVHQLRMPSDPQHPALEAIAAATQLTLADVQNEQRLRAARRASAGV
Ga0308178_10229692	3300030990	Soil	MSPTLSMPFAKRKPLTTTSDDVFVDYRQRRALEEHERADLKRADQAEQCSGLNSADRRIRAWEKVHHLRMPFDPLHPALGAIAAATQLTLTEVQNEQRLRSAVNVSK
Ga0308178_10464702	3300030990	Soil	MSSMMSGPFARKERFTTAGDELLCDYRQRRALEEREQIDLRCADQAEQRSAMNSADLRILAWEKVHQLRMPSDPQHPALEAIAAATQLTLA
Ga0308184_10145581	3300031095	Soil	MSSMISSRPEKNERYAGDELLIDYRQRRAHEERERAELKRVSVAEQHSATNSVDARIRAWEKVHHLRMPSDPAHPALAAIAAATQLTLTDILNEQRLRTARRASVGV
Ga0307513_103691322	3300031456	Ectomycorrhiza	MSSMISSRPEKNERYAGDELLIDYRQRRAHEERERAELKRVSVAEQHSASNSVDARIRAWEKVHHLRMPSDPTHPALAAIAAATQLTLAEILNEQRLRSARRAPVGA
Ga0302321_1004636233	3300031726	Fen	MSSMMSMPFATRKQFPTSGDELFVDYRQRRALEEQERADLKIADQAQQCSGLNSAASRIRAWEKVHHLRMPSDPQHLVLGAIAVATQLTLGDIQNEQRLRSAQRASVGV
Ga0308176_124844522	3300031996	Soil	MSSIMSMPFAINRPTSGDDLFVDYRQRRAQEEGERADLKRADQAEQCSGLNSADRRIRAWEKVHHLRMPSDPQHPALSAIAAATQLTLADVQNEQRLRSARCASAGF
Ga0307416_1008083552	3300032002	Rhizosphere	MSSMMFSQAKDERSGSTDSEVVSDFRQRRAREELERAEQKRLDQADQYAELSSAEQRIRAWEKVHHLRMPSDPAHPVLNVIAKATQLTLADVRNEQKLRAERRTSGGI
Ga0308173_104648833	3300032074	Soil	MRSMTSMPFATNEPITTAQDGLLSDYRQRRALEERERADLKRADQAEQCATLNSADLRIRAWEKVHQLCMPSDPQHPALGAIAAATQ
Ga0335070_100022844	3300032829	Soil	VYAMMTFPAAQDERFTSRDVEILADYRQRRALEELERAQRKRMDLAEQHSAENSVDVRIRAWEKAHGLRMPSDPKHPVLHAIAAATQLSLADVLNEQGLRSTRRASVGA
Ga0335069_102057114	3300032893	Soil	VNAMMTFPAAQDERFTSRDVEILADYRQRRALEELERAQRKRMDLAEQHSAENSVDVRIRAWEKAHGLRMPSDPKHPVLHAIAAATQLSLADVLNEQGLRSTRRASVGA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F056692

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences