NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222691_1001861

Scaffold Ga0222691_1001861


Overview

Basic Information
Taxon OID3300022851 Open in IMG/M
Scaffold IDGa0222691_1001861 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #1237
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5666
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (94.44%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003677Metagenome / Metatranscriptome474Y
F003834Metagenome / Metatranscriptome466N
F018266Metagenome / Metatranscriptome236N
F025387Metagenome / Metatranscriptome202Y
F026154Metagenome / Metatranscriptome199Y
F050676Metagenome / Metatranscriptome145N

Sequences

Protein IDFamilyRBSSequence
Ga0222691_10018613F003677AGGMIDEALHFDVKDANKKVYEIEYDVTYATKWQVLAHDKDEALDIWSDQHKINMSTEDSRDIVCSYSKDYTEIGGCKEIATIKYNKEDDEVYVDES
Ga0222691_10018614F003834AGGAMSSTRTPIRQAEMDYLDHFMETKYDERKNILKTEMQDTIDTEAETNFDAFKEKLKLTKLHEDVRTYFNDHQKFANEMDTTLSNKKDKLDNAINDLEGKLENWKKVRKWDTEIERSLIKHPDELDRLLKKICHEETSRDFYSGPRGKALQMLDMSKEYCKNLLNAGQSLATVWGVVGKEMAKEKINTSTVPKPEFLAITK
Ga0222691_10018615F050676AGGAGGMQTKLPVKERVADKYQPMLTYYAELIGLCHETVTRTESLKMLDPMGKKTTATSLFIRVCQRMDKSIDAKDVAEKLETISQSTNERKTA
Ga0222691_10018616F025387GGAMTKRVEKLGEQIVRLITYPIRATIGVCKCIHNSTPDTLDDCMPFEIKLKKEEDNADKTTS
Ga0222691_10018617F026154AGGAGMNGIFTVIRFVTYTIGGLTIRKGWNWLMADIDPIPGSKEFDIEYYQTKEKYIRLTKKKENYDETSREVRRADR
Ga0222691_10018619F018266GGAGMYKVIIEGKFRENPINLARAVKLLYNQQFTGSIRQEHLLWWKKYFLKVIHLPILYPKRGYIQMVKIYRDKTPSVRVVTIPTSSDKRELLVLNKIYGGDNG
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