Scaffold Ga0222649_1003915

Overview

Basic Information

• Taxon OID: 3300022839
• Scaffold ID: Ga0222649_1003915
• Source Dataset Name: Saline water microbial communities from Ace Lake, Antarctica - #337
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2958
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → unclassified Bacillus (in: Bacteria) → Bacillus sp. FJAT-22090 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008385	Metagenome	334	Y
F063081	Metagenome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222649_10039151	F008385	N/A	YKICIKCKNHADVIEGTKNYCVECWYLHINGKSIKEADQEIKEEERFKDKK
Ga0222649_10039156	F063081	GAGG	VVSDKINFKLFKPFGSTIAKSVLPLNLMKEFQEDLKQIREDKDKAKNHD