Scaffold Ga0222646_100020

Overview

Basic Information

• Taxon OID: 3300022822
• Scaffold ID: Ga0222646_100020
• Source Dataset Name: Saline water microbial communities from Ace Lake, Antarctica - #293
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 90405
• Total Scaffold Genes: 170
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 48 (28.24%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001222	Metagenome / Metatranscriptome	743	Y
F003188	Metagenome / Metatranscriptome	502	Y
F012286	Metagenome / Metatranscriptome	282	Y
F061285	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222646_100020115	F001222	N/A	MKQLEKLVKEVLTEAAKIKFSGHEFMLKVDTNEDPQKKGVKVQFIPTQFGQITTTQQNDIAIELETRLEKGLGEFDMRVERDRNLKDKTIIGFFIYIEYFDRIIRKALAGENPDQNEVPSEEEM
Ga0222646_100020117	F003188	AGTAG	MVDPRKKIRQVLHSVYPLGYRIKQKEPNQDYMNKKLFIEVLNQMRQIEERRDFMEEEIGMDMTQYEEQFFAVIENLMKMHFTKEQLALIQMYLYQLVPDKEWDGTITIDVGKKEEIVKFKKPEDVWNVISKFIK
Ga0222646_100020121	F061285	N/A	MKKTKTAKLSTFKKHKSLERKVADDLVRLHERNEKLRDKTIDISFFDLF
Ga0222646_10002023	F012286	N/A	MLRKPNSIPAGDTLIQDLVMEPFFIAKSQSGGYTVYERVTKGEKSTEYIKTVCYPSNFNHALKVVANEKLNNGESKSYTLKEYTDRWEDIQKEMLSMTTIEG