Scaffold Ga0222673_1001005

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0222673_1001005

Scaffold Ga0222673_1001005

Overview

Basic Information
Taxon OID	3300022821 Open in IMG/M
Scaffold ID	Ga0222673_1001005 Open in IMG/M
Source Dataset Name	Saline water microbial communities from Ace Lake, Antarctica - #801
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	10394
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Ace Lake
Coordinates	Lat. (^o)	-68.4725	Long. (^o)	78.188	Alt. (m)		Depth (m)	13
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F060867	Metagenome / Metatranscriptome	132	N
F105913	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222673_100100510	F105913	GGAG	MSTYNKESVEKAIKASSKPISKKEGKLIHKLLKGHS
Ga0222673_100100515	F060867	AGGAG	MQPAYSTEAVETKEKQSTGNRLKFKLEFMIMMLNCDRTEEAGKMYNQLIEEFDKLA

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