Scaffold Ga0222622_10155671

Overview

Basic Information

• Taxon OID: 3300022756
• Scaffold ID: Ga0222622_10155671
• Source Dataset Name: Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1478
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9201
  • Long. (^o): -106.9487

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001033	Metagenome / Metatranscriptome	799	Y
F080416	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222622_101556712	F001033	GAG	MNDSSFIANGGNFTFPDKANEKRELLMCGHSLIARLTIAVFVFQMLGVTSVVHAERPDSTAGTSSAGTRKLFIGPSSASVALGKASLIVSPLTHRDGNYVGDYQLKVKPYFFKSEKGSLLLAASDDAVRKLQAGTAINFTGQAVTHKDGRTHIVLGRATPSSRDRGSVTFSIVTDDARMVFNTSYHFPAPRP
Ga0222622_101556713	F080416	N/A	MSTLRTSVGEFVFRQTPLGCHLELVVGNARWALGLYGTNEAAVRALKNGRTGFRTWDALDRRTAGNQIGTLSRWNKGEQTA