Scaffold Ga0214917_10127122

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10127122
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1404
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019319	Metagenome	230	N
F040082	Metagenome	162	N
F058107	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_101271223	F019319	GGAGG	MTKKDIQDAIAFLEKMFVGVGDQDRLFEVIAALKEELARRNKK
Ga0214917_101271224	F040082	AGGAG	MTQDPYAMSQEIVELQTRVAELSVALERVTEQRDNAVDAAESLHQELEACRDRIKTLGGQLDRLRIHLQQGIEL
Ga0214917_101271225	F058107	AGGA	VITIGMDSFIVCQLCDGEVRLDTKRITGCLCDPDAPTWIGIEPDGRVLTFSQSHYEIVTDLGPRHNYD