NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10092109

Scaffold Ga0214917_10092109


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10092109 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1802
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011918Metagenome / Metatranscriptome285Y
F033721Metagenome / Metatranscriptome176Y
F039993Metagenome / Metatranscriptome162Y
F039994Metagenome162N
F102824Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0214917_100921091F102824AGGAMTPVRVQREEGKWRVTTMAGNPIGPRLWGAVPPNGLPSIEDLFEDKTKAQDAADLWNAYAMWCQERSGKRRRK
Ga0214917_100921093F039993N/AMKLALSWLLYHIGDILSYGVSRYGYGYSLYNKIMLLSSDLDDKGVIWK
Ga0214917_100921094F033721AGGAMRWIKKELDEEGKPEWAVYIDQTGESNESEWSHFDTYKTRDDAVQACWHFTWEDYDCSNK
Ga0214917_100921095F039994N/AMGMVEEVQSARYEVVMENPPTIEEMGNTASEIVWRVMGNGSAKSAYGEWFWKDKPTYDYHITRCIKHAVTAQQQIHLNHPNPDEAGENALDHLERAVVRALFAWMQLKKGLPRL
Ga0214917_100921096F011918N/AKVNPKYDPFYDSDCAQLWAYKYASENPKCACVSVVLAANDPETLVIHRWSEDELYEAGIAFQAMLKVWAWSKKYNPPGMKL
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