Scaffold Ga0214917_10071713

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0214917_10071713

Scaffold Ga0214917_10071713

Overview

Basic Information
Taxon OID	3300022752 Open in IMG/M
Scaffold ID	Ga0214917_10071713 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2173
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)		Depth (m)	2
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F077222	Metagenome	117	Y
F093846	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1007171311	F093846	AGGGGG	VEIGIVIVAAVLALAGASLASLLTNGTDDWAGQVKKAEKNRAKMKKALSK
Ga0214917_100717132	F077222	AGGA	VKILWIVLTVLAAVGKGRRVLPWAILAYFGGWVALGLVCLTRQRPLRPVPPWMLNLGYQSQAKRAFAKIDTPKDLLG

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