NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10057786

Scaffold Ga0214917_10057786


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10057786 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2557
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011753Metagenome / Metatranscriptome287Y
F033721Metagenome / Metatranscriptome176Y
F039993Metagenome / Metatranscriptome162Y
F039994Metagenome162N
F091592Metagenome107N
F102824Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0214917_100577862F091592GGAMISAQFTRGDEDDRIKQLAGEVAIRAIQDVRLLQRRGVLDGMRLTKNRIGKLSDCNCYRDIKAVRSLVRDIKNGTVLFWCKMAGVRIDQATLNRVIGKGLKHVN
Ga0214917_100577863F102824AGGAMTPVRVQREEGKWRVTTMAGNPIGPRLWGAVPPNGLPSIEDLFEDKTMAQDAADLWNAYAMWCQERSGKRKRK
Ga0214917_100577865F039993N/AMKLALAWVCYCVGDLISITLMRLGIGYSLYNKLMLLSSDLDDKGVIWK
Ga0214917_100577866F033721AGGAMRWIKKELDEEGKPEWAVYIDNVGEGNEEDWSHFDTYKTRDDAVQACQRFTWEDYDCSDK
Ga0214917_100577867F039994AGAAGGVGQGIYPARDEAIMDNPPTIEEMGNAASEIVWRVMGNGSAKSAYGEWFWKDKPTYDYHITRCIKHAVTAQQQIHLNHPNPDESGENALDHLERAVVRALFAWMQLKKGLPRL
Ga0214917_100577868F011753N/AVSKDETLAPYIKTFKKWADENVEKTYWCEKSLVGPGYAGRCDAYVRLKGIGDAIIDLKNRKINKKYNTPPFYPTDAQQLWAYRNASENPKCACVSVVLASNDPEYIKHHQWDEDELYQAGIAFCAMQKVWAWVKEYTPPGMKL
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